View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_high_4 (Length: 649)
Name: NF17083_high_4
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 129 - 639
Target Start/End: Complemental strand, 33628614 - 33628103
Alignment:
| Q |
129 |
tgaatgatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaat |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628614 |
tgaattatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaac |
33628515 |
T |
|
| Q |
229 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628514 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
33628415 |
T |
|
| Q |
329 |
tgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnn-tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgcccc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628414 |
tgtgcattgaatccaaagcaattcctttagtctccggcaaaaaaaatataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgcccc |
33628315 |
T |
|
| Q |
428 |
aaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttata |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33628314 |
aaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaacagctatgctttgtccagtgcttcttata |
33628215 |
T |
|
| Q |
528 |
tttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628214 |
tttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattg |
33628115 |
T |
|
| Q |
628 |
cattgccctttg |
639 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33628114 |
cattgccctttg |
33628103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 252 - 637
Target Start/End: Complemental strand, 33610006 - 33609620
Alignment:
| Q |
252 |
caaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaatt |
351 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||||| ||| |||||||||||||||| |||||||| ||| |||||||||||||| |||| |
|
|
| T |
33610006 |
caaacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatggtgtacattgaatccaaaggaatt |
33609907 |
T |
|
| Q |
352 |
cctttagtctccggcnnnnnnn-tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatag |
450 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| || || |||||||| ||||| |||||||| | |
|
|
| T |
33609906 |
cctttagtctcaggcaagaaaaatataataaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataacattg |
33609807 |
T |
|
| Q |
451 |
tcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttgg |
550 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||| || | ||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
33609806 |
tcaagaatgtttgtgatagcacaaatactattatgaattgtatagcaatagctatgctttgtcctgtggttcttatatttactgggaaaatctcacttgg |
33609707 |
T |
|
| Q |
551 |
aattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctt |
637 |
Q |
| |
|
||| |||||||||||||||| ||| ||| |||||||||| |||| || ||||| | ||| |||||||| ||||||||||| ||||| |
|
|
| T |
33609706 |
aataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacataatagcaccaatactaatattgcattcccctt |
33609620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 280 - 637
Target Start/End: Complemental strand, 33619260 - 33618902
Alignment:
| Q |
280 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnt-ataa |
378 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||| | |||||||| ||| |||||| ||||||| ||||||||| ||||| ||| |||| |
|
|
| T |
33619260 |
tcttgtcctttaacataccgagaccaaaaccagtgtctgccccatatagtgtacattgactccaaaggaattcctttggtctcaggcaagaagaagataa |
33619161 |
T |
|
| Q |
379 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatat |
478 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| | || ||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
33619160 |
caaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagat |
33619061 |
T |
|
| Q |
479 |
cattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgac |
578 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||| |||||||||| |||| ||| ||| |
|
|
| T |
33619060 |
tattatgaattgcacagcaacagctatgctttgtcctgtggttcttatttttactgggaaaatctcacttggaataagccatgttaatggaccccatgac |
33618961 |
T |
|
| Q |
579 |
aaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctt |
637 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
33618960 |
caaccaaaacctgcagagtagaaacacaatagcaccaataccactattgcattgccctt |
33618902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 398 - 639
Target Start/End: Complemental strand, 33623957 - 33623716
Alignment:
| Q |
398 |
aacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagca |
497 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| || |
|
|
| T |
33623957 |
aacccaacccgcatagaacaaaatggccccaaagtataactggcataacatagtcaagaatgtttgcgatagcacaaagaccattatgaaatgcacaaca |
33623858 |
T |
|
| Q |
498 |
actgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcat |
597 |
Q |
| |
|
|| ||||||||||||| | |||||| ||||| | || |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
33623857 |
acagctatgctttgtcgaatgcttcctatataaatggggaaaatctcagttggaattagccatgttagagggctccacgacaaatctaaacccgcagcac |
33623758 |
T |
|
| Q |
598 |
agaaacacattagtaccaataccaatattgcattgccctttg |
639 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
33623757 |
agaaacatattagtaccaatatcaatattgcattgccctttg |
33623716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 33624831 - 33624556
Alignment:
| Q |
8 |
cattcttattgcattgtggtgttaa----atatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaactttt |
103 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
33624831 |
cattctaattgcattgtggtgttaagcttatatacactcacacattctaattaacttgctaaaaactctcaattattaacacacttcttaactaaccttt |
33624732 |
T |
|
| Q |
104 |
aacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaaaactgaatt-ttaaaaaatctagtacaaatataagaaatagtaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||| || | ||||||| ||| || ||||||||||||||| | |
|
|
| T |
33624731 |
aacacaagtgaactcctaacaactatgaattatagatttcatcaaatctaagcaacattgacttctgaaaaaatatagcactaatataagaaatagt--a |
33624634 |
T |
|
| Q |
203 |
tataatgtttcaaaaaatacatcaata-atttttctttcaattttgcatgcaaacttcatggatgatttccttctccg |
279 |
Q |
| |
|
|||| | ||||||| |||| ||||| | ||||||||||| |||| || ||||||||||||| |||||||||||||| |
|
|
| T |
33624633 |
tatattttttcaaagaatatatcaacatttttttctttcatgtttgtatacaaacttcatggacgatttccttctccg |
33624556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 283 - 639
Target Start/End: Complemental strand, 33596548 - 33596191
Alignment:
| Q |
283 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taatga |
381 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || | |
|
|
| T |
33596548 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33596449 |
T |
|
| Q |
382 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
481 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | || |
|
|
| T |
33596448 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagat |
33596349 |
T |
|
| Q |
482 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaa |
581 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| || |
|
|
| T |
33596348 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaa |
33596249 |
T |
|
| Q |
582 |
ccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
639 |
Q |
| |
|
|||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33596248 |
ccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33596191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 281 - 639
Target Start/End: Complemental strand, 33603681 - 33603322
Alignment:
| Q |
281 |
cttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taat |
379 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || |
|
|
| T |
33603681 |
cttctactttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgat |
33603582 |
T |
|
| Q |
380 |
gaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatc |
479 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
33603581 |
aaatagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaag |
33603482 |
T |
|
| Q |
480 |
attatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgaca |
579 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| |
|
|
| T |
33603481 |
attatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagacc |
33603382 |
T |
|
| Q |
580 |
aaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
639 |
Q |
| |
|
|||||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33603381 |
aaccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33603322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 283 - 639
Target Start/End: Complemental strand, 33589376 - 33589019
Alignment:
| Q |
283 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taatga |
381 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || | |
|
|
| T |
33589376 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33589277 |
T |
|
| Q |
382 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
481 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||| ||| | || |
|
|
| T |
33589276 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacataaacaagat |
33589177 |
T |
|
| Q |
482 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaa |
581 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| || |
|
|
| T |
33589176 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaa |
33589077 |
T |
|
| Q |
582 |
ccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
639 |
Q |
| |
|
|||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33589076 |
ccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33589019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 374 - 607
Target Start/End: Complemental strand, 33563703 - 33563470
Alignment:
| Q |
374 |
tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacaca |
473 |
Q |
| |
|
|||||| || || ||||| ||||||| |||| || || |||||| || || ||| |||||||||| |||||||| ||||||||||| || || |||||| |
|
|
| T |
33563703 |
tataataaagagggtcatgacaacaatccaagcactatggaacaagaaagcaccatacttcaagtgacataacattgtcaagaatgtctgagacaacaca |
33563604 |
T |
|
| Q |
474 |
aatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactcc |
573 |
Q |
| |
|
||||| ||||||| ||||||| || ||||||||||||||||| |||| || || | |||||||| ||| ||||||||| |||| |||||||| || |
|
|
| T |
33563603 |
aatatagttatgaattgcacagaaatagctatgctttgtccagttgttctgattttcaaaggaaaaatttcacttggaattatccataatagaggacccc |
33563504 |
T |
|
| Q |
574 |
acgacaaaccaaaacccgcagcatagaaacacat |
607 |
Q |
| |
|
| ||| |||||||||| |||| ||||||||||| |
|
|
| T |
33563503 |
atgaccaaccaaaacctgcagagtagaaacacat |
33563470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 12059786 - 12059882
Alignment:
| Q |
62 |
ctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaa |
158 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||| | |||||||||| ||||| |||||||||||||| || ||||| |||||||| |||||| |
|
|
| T |
12059786 |
ctaaaatctctcatctaataacaaacttcttaactaacctgtaacacaagtaaactcgtaacaactatgaattatggatttgatcaaatccaaacaa |
12059882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 12053055 - 12053171
Alignment:
| Q |
32 |
aatatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatga |
131 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||| |||||| || ||||| ||||||||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
12053055 |
aatatacactcacaattactaagaaacttgctaaaatttctcaactactaacatacttcttaact----tgtaacacaagtaaactcctaacaactatga |
12053150 |
T |
|
| Q |
132 |
atgataga-ttttatcaaatc |
151 |
Q |
| |
|
|| || || |||||||||||| |
|
|
| T |
12053151 |
attatggatttttatcaaatc |
12053171 |
T |
|
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