View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17083_high_40 (Length: 259)

Name: NF17083_high_40
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17083_high_40
NF17083_high_40
[»] chr1 (13 HSPs)
chr1 (13-243)||(35203439-35203669)
chr1 (60-239)||(35193135-35193314)
chr1 (72-229)||(35249880-35250037)
chr1 (60-233)||(35477216-35477389)
chr1 (86-239)||(45527087-45527240)
chr1 (58-232)||(35254170-35254344)
chr1 (90-239)||(35265638-35265787)
chr1 (87-233)||(35223075-35223221)
chr1 (90-244)||(35228733-35228887)
chr1 (87-181)||(45534691-45534785)
chr1 (117-229)||(8640604-8640716)
chr1 (90-239)||(35273167-35273316)
chr1 (61-230)||(35294831-35295000)
[»] chr3 (1 HSPs)
chr3 (91-229)||(898483-898621)
[»] chr2 (1 HSPs)
chr2 (147-225)||(33135429-33135507)
[»] chr7 (1 HSPs)
chr7 (125-230)||(38633793-38633898)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 35203439 - 35203669
Alignment:
Q  13 cagagagagctagatacagagattttttggttggaacgttagcaagggagatgatatagtcgatgaaatgagaatcggaagggagaaattgattccagac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35203439 cagagagagctagatacagagattttttggttggaacgttagcaagggagatgatagagtcgatgaaatgagaatcggaagggagaaattgattccagac 35203538  T
Q  113 ggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatcct 212  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35203539 ggcgtcggaatcggcggcagaaagaattgtcttggaaacaacggagagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatcct 35203638  T
Q  213 tccggcaattcctcaaacgctgtcatttttt 243  Q
    |||||||||||||||||| ||||||||||||    
T  35203639 tccggcaattcctcaaactctgtcatttttt 35203669  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 35193135 - 35193314
Alignment:
Q  60 gagatgatatagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggaga 159  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || ||||||||||||| |||||    
T  35193135 gagatgatagagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcagaatcggctgcagataggaaagtcttggaaacaacggaga 35193234  T
Q  160 gtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaacgctgtcatt 239  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||| ||||||||    
T  35193235 gtctgccggcatcagccggagttgtgcgagagattatggcggaaatgcatccttccgataattcctcaaactctgtcatt 35193314  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 35249880 - 35250037
Alignment:
Q  72 tcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgt 171  Q
    ||||||||||  | || |||||||| ||| || |||||||||||||||||||| ||||||||| | | |||||| ||||| |||||||||||| ||||||    
T  35249880 tcgatgaaatcgggataggaagggataaagtggttccagacggcgtcggaatcagcggcagaacggagtgtcttagaaacgagggagagtctgacggcgt 35249979  T
Q  172 cagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaa 229  Q
    || | ||||| || |||||||| ||||||| ||||||  ||||||||||||| |||||    
T  35249980 caacgggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaa 35250037  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 35477216 - 35477389
Alignment:
Q  60 gagatgatatagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggaga 159  Q
    ||||||||  |||||||||| || |||||  || ||||||| |||||||| |||||||| ||||| |||||| || | |||||||||||||| | |||||    
T  35477216 gagatgatgaagtcgatgaattgggaatcataacggagaaagtgattccatacggcgtccgaatcagcggcacaacggaatgtcttggaaacgacggaga 35477315  T
Q  160 gtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaacgct 233  Q
     ||||||||||||||| ||||| || | ||| || ||||||| |||||| |||||||| ||||| |||||||||    
T  35477316 atctgccggcgtcagctggagtggtacaagatagtatggcggcaatgcacccttccggtaattcttcaaacgct 35477389  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 45527087 - 45527240
Alignment:
Q  86 atcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtg 185  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||| | ||||||||||||||||||| | ||||| ||     
T  45527087 atcggaaggaagaaagtgattccagacggcatcggaatcggcggcagaaaggaaagtcttcgaaacgacggagagtctgccggcgtcaacaggagtcgta 45527186  T
Q  186 cgagagagaatggcggaaatgcatccttccggcaattcctcaaacgctgtcatt 239  Q
    || || || |||| ||||||||| ||||| |  || || |||||| ||||||||    
T  45527187 cgtgacagtatggaggaaatgcaaccttctgctaaatcttcaaaccctgtcatt 45527240  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 232
Target Start/End: Original strand, 35254170 - 35254344
Alignment:
Q  58 gggagatgatatagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaaggga 157  Q
    ||||||||| |  ||||||||| || |||||||||||||||||||||||||| ||  ||||||||| |||||||||| | || || ||||| || || ||    
T  35254170 gggagatgacagtgtcgatgaattgggaatcggaagggagaaattgattccatacttcgtcggaattggcggcagaacggaaagttttggagacgagaga 35254269  T
Q  158 gagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaacgc 232  Q
    ||| ||| ||||||||   ||||| || |||||||| || |||| ||  ||| ||||||||||||||||||||||    
T  35254270 gagcctgacggcgtcaaaaggagtggtacgagagagtatcgcggcaacacattcttccggcaattcctcaaacgc 35254344  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 35265638 - 35265787
Alignment:
Q  90 gaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgag 189  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||  | || ||||| ||||| | ||||||||||||||||||| | |||||||| ||||    
T  35265638 gaaggtagaaattgattccagacagcgtcggaatcggaggctgatcggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgag 35265737  T
Q  190 agagaatggcggaaatgcatccttccggcaattcctcaaacgctgtcatt 239  Q
    |||  |||| || |||||| ||||||||||| |||| || | ||||||||    
T  35265738 agactatggtggcaatgcaaccttccggcaaatcctgaatctctgtcatt 35265787  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 35223075 - 35223221
Alignment:
Q  87 tcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgc 186  Q
    |||||| ||||||| |||||||| |||||||| ||||||||||| ||| | || || || ||||| | || |||||||||||||||||||||||||||      
T  35223075 tcggaacggagaaaatgattccaaacggcgtcagaatcggcggcggaacggaaagtttttgaaacgacggcgagtctgccggcgtcagccggagttgtaa 35223174  T
Q  187 gagagagaatggcggaaatgcatccttccggcaattcctcaaacgct 233  Q
    ||||||| | |||||  ||||| |||||||| || || |||||||||    
T  35223175 gagagagcacggcggcgatgcacccttccggtaactcttcaaacgct 35223221  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 35228733 - 35228887
Alignment:
Q  90 gaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgag 189  Q
    |||||||||||  ||||||| || |||||||||||||  |||||||||||  |||||||||  | ||||||||||| ||||||  | |||||||| |  |    
T  35228733 gaagggagaaagcgattccatacagcgtcggaatcggacgcagaaagaaaattcttggaaatgaaggagagtctgcaggcgtcgactggagttgtactgg 35228832  T
Q  190 agagaatggcggaaatgcatccttccggcaattcctcaaacgctgtcattttttg 244  Q
    |||| |  || |  ||||| |||||||| ||||| ||||| ||||||||||||||    
T  35228833 agagtacagccgcgatgcacccttccggtaattcttcaaaggctgtcattttttg 35228887  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 45534691 - 45534785
Alignment:
Q  87 tcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagt 181  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||| | || |||||||| || |  |||| ||| ||||||||| |||||||    
T  45534691 tcggaagggagaaaatgattccagacggcgtcggaactggcggcagaatggaaagtcttggacacgacagagaatctaccggcgtcaaccggagt 45534785  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 8640604 - 8640716
Alignment:
Q  117 tcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccg 216  Q
    ||||| |||||||||||| | || |||||||| ||||| ||||| |||||| ||||| | ||||| || ||| |||| | ||||| ||||||||||||||    
T  8640604 tcggagtcggcggcagaacggaaagtcttggagacaagagagagcctgccgacgtcaacaggagtcgtacgacagagtacggcggcaatgcatccttccg 8640703  T
Q  217 gcaattcctcaaa 229  Q
     |||||| |||||    
T  8640704 ccaattcttcaaa 8640716  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 35273167 - 35273316
Alignment:
Q  90 gaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgag 189  Q
    ||||| |||||||||||||| || || |||||||||| ||| ||  | || ||||| ||||  |  |||||||||||||||||    |||||||| ||||    
T  35273167 gaaggtagaaattgattccatacagcatcggaatcggaggctgatcggaaagtcttagaaaagaccgagagtctgccggcgtcgagtggagttgtacgag 35273266  T
Q  190 agagaatggcggaaatgcatccttccggcaattcctcaaacgctgtcatt 239  Q
    |||  |||||||  ||||||||||||||||| |||| || | ||||||||    
T  35273267 agactatggcggcgatgcatccttccggcaaatcctgaatctctgtcatt 35273316  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 35295000 - 35294831
Alignment:
Q  61 agatgatatagtcgatgaaatgagaatcggaagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagag 160  Q
    |||| ||| |||| |||||| ||||||  | ||| |||||  ||| ||||||  ||||||| | ||| |||||| | || || |||||||| ||||||||    
T  35295000 agattatagagtcaatgaaaggagaatgaggaggtagaaagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaacgagggagag 35294901  T
Q  161 tctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcctcaaac 230  Q
    | | ||||||||| | |||||||| ||||| || |||| || |||||| ||||| | |||||||||||||    
T  35294900 ttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcacccttctgccaattcctcaaac 35294831  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 898621 - 898483
Alignment:
Q  91 aagggagaaattgattccagacggcgtcggaatcggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgaga 190  Q
    |||||||||| || ||||| || ||||||||||| |||||| |||| || |||||||||||||||||||||||||   | ||| | ||||| || |||||    
T  898621 aagggagaaagtggttccaaacagcgtcggaatcagcggcataaaggaaagtcttggaaacaagggagagtctgcaaacatcaacaggagtcgtacgaga 898522  T
Q  191 gagaatggcggaaatgcatccttccggcaattcctcaaa 229  Q
     |||||||| || |||||||||||||| ||||| |||||    
T  898521 cagaatggctgagatgcatccttccggaaattcatcaaa 898483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 33135507 - 33135429
Alignment:
Q  147 gaaacaagggagagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcct 225  Q
    |||||||  |||| ||||||||||||| ||||||||||  ||||||| || |||| ||| |||||||||||||| ||||    
T  33135507 gaaacaacagagaatctgccggcgtcaaccggagttgtatgagagagtatcgcggcaatacatccttccggcaagtcct 33135429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 38633793 - 38633898
Alignment:
Q  125 ggcggcagaaagaaatgtcttggaaacaagggagagtctgccggcgtcagccggagttgtgcgagagagaatggcggaaatgcatccttccggcaattcc 224  Q
    |||||||||| | ||||||||  |||| ||||||||||| || |||||| ||||||| || ||||| || ||   || ||||||  ||||||||| ||||    
T  38633793 ggcggcagaatggaatgtcttacaaacgagggagagtcttcccgcgtcaaccggagtcgtacgagacagtataatggcaatgcactcttccggcagttcc 38633892  T
Q  225 tcaaac 230  Q
    ||||||    
T  38633893 tcaaac 38633898  T

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