View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_43 (Length: 250)
Name: NF17083_high_43
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 54606544 - 54606347
Alignment:
| Q |
42 |
agcattatccaaatttcctttggttcccaagaaaagaaatggaaatccacatttcttgtttaaaactgttaatcattgcatacatgaattgtctcgcaaa |
141 |
Q |
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| T |
54606544 |
agcattatccaaatttcctttggttccgaagaaaagaaatggaaatccacatttcttgtttaaaactgttaatcattgcatacgtgaattgtctcacaaa |
54606445 |
T |
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| Q |
142 |
acaatgaaaaagcatcctgtatctcaaacattgaaccttttatattctggtttgacttcaactctaatctacttgtaacttctttcttttcttctcac |
239 |
Q |
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| T |
54606444 |
gcaacgaaaaggcatcctgtatctcaaacattgaaccttttatattatggtttgacttcaactctaatctacttgtaacttctttcttttcttctcac |
54606347 |
T |
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