View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_5 (Length: 622)
Name: NF17083_high_5
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 17 - 606
Target Start/End: Original strand, 11027453 - 11028042
Alignment:
| Q |
17 |
atattcagtccattaaccagaccctataggtttagaatagtctatttaaatgaattagtgcatatactttattgacgcctttgaaatatattagaaactt |
116 |
Q |
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| T |
11027453 |
atattcagtccattaaccagacactataggtttagaatagtctatttaaatgaattagtgcatatactttattgccgcctttgaaatatattagaaactt |
11027552 |
T |
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| Q |
117 |
tttctacattgttgcattttatgtaactgagcaatttatatggcaaggaaatgaacttttaaatttagtgaagttatcttttatagaatatctttagaaa |
216 |
Q |
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| T |
11027553 |
tttctacattgttgcattttatgtaactgagcaatttatatggcaaggaaatgaacttgtaaatttagtgaagttatcttttatagaatatctttagaaa |
11027652 |
T |
|
| Q |
217 |
cataaattcattttccaatcagattagctcaagataatttgattagaatatgccatcccttgcgttgcttgagctattcaattcattatggagccgagaa |
316 |
Q |
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| T |
11027653 |
cataaattcatttttcaatcagattagctcaagataatttgattagaatatgccatcccttgcgttgcttgagctattcaattcattatggagccgagaa |
11027752 |
T |
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| Q |
317 |
aatgatttggtggaataggcattacgacattacaatatttgacttagagatttgtaacacttcaatctgttggtgtttgccttacatattctcttgcaat |
416 |
Q |
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| T |
11027753 |
aatgatttggtggaataggcattacgacattacaatatttgacttagagatttgtaacacttcaatctgttggtgtttgccttacatattctcttgcaat |
11027852 |
T |
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| Q |
417 |
tgatacagtttgttccactgttgaatggtggaggatttactcttgcgagaaactcgacagatctgtttcaaagttttgggtttcattcacagccagtcat |
516 |
Q |
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| T |
11027853 |
tgatacagtttgttccactgttgaatggtggaggatttactcttgcgagaaactcgacagatctgtttcaaagttttgggtttcattcacagccagtcat |
11027952 |
T |
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| Q |
517 |
cattggactcatcatatatctggtactttctaaaattataactggcatggatggcagtaaaacaagttatttccattgaacccaaaaaat |
606 |
Q |
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| T |
11027953 |
cattggactcatcatatatctggtactttctaaaattataactggcatggatggcagtaaaacaagttatttccattgaacccaaaaaat |
11028042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 29809265 - 29809186
Alignment:
| Q |
476 |
gatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatcatatatctggtactttctaaaattat |
555 |
Q |
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| T |
29809265 |
gatctgttccaaagttttgggtttgatacacagccagtcctcattggactcatcctatttcaggtgcttttaaaaattat |
29809186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 24835397 - 24835450
Alignment:
| Q |
476 |
gatctgtttcaaagttttgggtttcattcacagccagtcatcattggactcatc |
529 |
Q |
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| T |
24835397 |
gatctgttccaatgttttgggtttgatacacagccagtcctcattggactcatc |
24835450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 52673154 - 52673089
Alignment:
| Q |
43 |
taggtttagaatagtctatttaaatgaattagtgcatatactttattgacgcctttgaaatatatt |
108 |
Q |
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| T |
52673154 |
taggtttagaatagtctatttaaacaaattagtgcacgtactttattcataactttgaaatatatt |
52673089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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