View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_52 (Length: 220)
Name: NF17083_high_52
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 12072819 - 12072655
Alignment:
| Q |
35 |
gacttcacgttgaattgagttttcttgtttcttccttccaagtgacacnnnnnnnnnnnnntttaacataaggtattaattatgggtttcctctacttat |
134 |
Q |
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| T |
12072819 |
gacttcacgttgaattgagttttcttgtttcttccttccaagtgacactatatatatat--tttaacataaggtattaattatgggtttcctctacttat |
12072722 |
T |
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| Q |
135 |
tttgagattgtcacggttgtttatttgttgatcaaaattcgaatcagtactgtgtggttctgttctg |
201 |
Q |
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| T |
12072721 |
tttgagattgtcacggttgtttatttcttgatcaaaattcgaatcagtactgtgtggttctgttctg |
12072655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 12065975 - 12065871
Alignment:
| Q |
96 |
tttaacataaggtattaattatgggtttcctctacttattttgagattgtcacggttgtttatttgttgatcaaaattcgaatcagtactgtgtggttct |
195 |
Q |
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| T |
12065975 |
tttaacataaggtattaattatgggtttcctctacttattttaagattgtcacggttg-ttatttgttgatcaaaattcgaatcagtactgtgtggttct |
12065877 |
T |
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| Q |
196 |
gttctg |
201 |
Q |
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| T |
12065876 |
gttctg |
12065871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 12066050 - 12066005
Alignment:
| Q |
37 |
cttcacgttgaattgagttttcttgtttcttccttccaagtgacac |
82 |
Q |
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| T |
12066050 |
cttcacgttgaattgagttttcttgtttcttccttccaagtgacac |
12066005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 4765034 - 4765120
Alignment:
| Q |
96 |
tttaacataaggtattaattatgggtt---tcctctacttattttgagattgtcacggttgtttatttgttgatcaaaattcgaatca |
180 |
Q |
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| T |
4765034 |
tttaacataaggtattaattatgggtttactcttcttcttgttttgagattgtcacggttg-ttatttgttgatcagaattcgaatca |
4765120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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