View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_54 (Length: 209)
Name: NF17083_high_54
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 3940352 - 3940516
Alignment:
| Q |
27 |
actaagctgctgttggacatcaactaaagtagttctagcatcttcaactcttttggcaataccttgaaaatgtgtagaatttaactcttttagatctttt |
126 |
Q |
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|||||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940352 |
actaagctgcctttggacgtcaactaaagcagttctagcatcttcaacttttttggcaataccttgaaaatgtgtagaatttaactcttttagatctttt |
3940451 |
T |
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| Q |
127 |
ttcaaggctttcaacttgaaccatatattggtcaagagattagtatgcaaattcggaccccattt |
191 |
Q |
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| T |
3940452 |
ttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaattcggaccccattt |
3940516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 35168619 - 35168783
Alignment:
| Q |
27 |
actaagctgctgttggacatcaactaaagtagttctagcatcttcaactcttttggcaataccttgaaaatgtgtagaatttaactcttttagatctttt |
126 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168619 |
actaagctgcctttggacatcaactaaagcagttctagcatcttcaacttttttggtagtaccttgaaaatgtgtagaatttaactcttttagatctttt |
35168718 |
T |
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| Q |
127 |
ttcaaggctttcaacttgaaccatatattggtcaagagattagtatgcaaattcggaccccattt |
191 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
35168719 |
ttcaaggctttcaacttgaaccatatattagtcaagagattagtatgcaaattctgaccctattt |
35168783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 33633589 - 33633725
Alignment:
| Q |
15 |
cataggatcagtactaagctgctgttggacatcaactaaagtagttctagcatcttcaactcttttggcaataccttgaaaatgtgtagaatttaactct |
114 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
33633589 |
cataggatcagtactaagctgcttttggacatcaactaaagtagttctaacatcttcaacttttttgacaataccttgaaaatgtgtagaatttaactct |
33633688 |
T |
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| Q |
115 |
tttagatcttttttcaaggctttcaacttgaaccata |
151 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33633689 |
tttagatcttttttcaaggctttcaacttgaaccata |
33633725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 30282618 - 30282752
Alignment:
| Q |
27 |
actaagctgctgttggacatcaactaaagtagttctagcatcttcaactcttttggcaataccttgaaaatgtgtagaatttaactcttttagatctttt |
126 |
Q |
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|||||||||| |||||| |||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282618 |
actaagctgcctttggacgtcaactaaagcagttctagcatcttcaacttttttggtattaccttgaaaatgtgtagaatttaactcttttagatctttt |
30282717 |
T |
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| Q |
127 |
ttcaaggctttcaacttgaaccatatattggtcaa |
161 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
30282718 |
ttcaaggctttcaacttgaaccatatattagtcaa |
30282752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 40951337 - 40951241
Alignment:
| Q |
59 |
ttctagcatcttcaactcttttggcaataccttgaaaatgtgtagaatttaactcttttagatcttttttcaaggctttcaacttgaaccatatatt |
155 |
Q |
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|||| |||||||||| | |||||| |||||||||||| | ||| |||||||||||| | ||||| ||||| || |||||||||||||||||||| |
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| T |
40951337 |
ttctcgcatcttcaatttttttggtaataccttgaaagtacttagtatttaactctttcaactctttcttcaaagccttcaacttgaaccatatatt |
40951241 |
T |
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