View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_56 (Length: 201)
Name: NF17083_high_56
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 30278100 - 30278236
Alignment:
| Q |
52 |
aaggatgttaaatactctttctaaggtaatactccactttactcttaaattattagaacttctcatatctttcatgatggtgtttcattagatacacaga |
151 |
Q |
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| T |
30278100 |
aaggatgttaaatactctttctaaggtaatactccactttactcttaaattattagaacttctcatatctttcatgatggtgtttcattagatacgcaga |
30278199 |
T |
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| Q |
152 |
tttagtaaatgtaacagcattttcctcgtagtataat |
188 |
Q |
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| T |
30278200 |
tttagtaaatgtaacagcattttcctcgtagtataat |
30278236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 30284769 - 30284892
Alignment:
| Q |
52 |
aaggatgttaaatactctttctaaggtaatactccactttactcttaaattattagaacttctcatatctttcatgatggtgtttcattagatacacaga |
151 |
Q |
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|||||| ||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| | |||||||||||||||| ||| |
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| T |
30284769 |
aaggatattaaatactttttctaagttaatactccacgttactcttgaattattataacttctca-------------gatgtttcattagatacaaaga |
30284855 |
T |
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| Q |
152 |
tttagtaaatgtaacagcattttcctcgtagtataatc |
189 |
Q |
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|||||||||||| ||| |||||||||| |||||||||| |
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| T |
30284856 |
tttagtaaatgt-acaacattttcctcatagtataatc |
30284892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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