View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_10 (Length: 470)
Name: NF17083_low_10
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 54605913 - 54606370
Alignment:
| Q |
11 |
caaaggccacaatttactagcatgcttaaatttcctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactaggtaagttaaata |
110 |
Q |
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| T |
54605913 |
caaaggccacaatttactagcatgcttaaattccctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactagcctagctaaata |
54606012 |
T |
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| Q |
111 |
actggctttagttacccaagaacaattcataaaaatgaccaggaaattgactaattctttaactcattcaaaggttacttgtcatatgcaatgaaagaaa |
210 |
Q |
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| T |
54606013 |
aatggctttagttacccaagaacaattcataaaaatgaccaagaaattggctaattctttaactcattcaaaggttacttgtcatatggaatgaaagaaa |
54606112 |
T |
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| Q |
211 |
ga----ctaattcgttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtct--acaa |
304 |
Q |
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| T |
54606113 |
gactagctaattcgttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtctacacaa |
54606212 |
T |
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| Q |
305 |
aactgaacatctcctaaaagcagaaaaattgtgtacaaattcagcagaaaaagcagaataatctgtccaaaact-nnnnnnnncagcctcttgaaactat |
403 |
Q |
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| T |
54606213 |
aactgaacatctcctcaaagcagaaaaattgtgtacaaattcagcagaaa---------aatctgtccaaaactaaaaaaaaacagcctcttgaaactat |
54606303 |
T |
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| Q |
404 |
tgaacaaaaacaatgttgtgtatcttgattgtcttctgttttggtgagaagaaaagaaagaagttac |
470 |
Q |
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| T |
54606304 |
tgaacaaaaacaatgttgtgtatcttgattgtcttctgttttggtgagaagaaaagaaagaagttac |
54606370 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 34386501 - 34386447
Alignment:
| Q |
226 |
atggctatggtataacaag-ttactatctacaattgaaactagtgacgcattgaa |
279 |
Q |
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| T |
34386501 |
atggctatggtataacaaggttactatccacaattgaaactagtgacacattgaa |
34386447 |
T |
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