View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_low_12 (Length: 464)
Name: NF17083_low_12
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_12 |
 | |
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| [»] scaffold0479 (3 HSPs) |
| | |
|
| [»] scaffold0210 (2 HSPs) |
| | |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: scaffold0479 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 42 - 447
Target Start/End: Original strand, 11676 - 12084
Alignment:
| Q |
42 |
caactaactaatatgatcccataatcatgttgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtacc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11676 |
caactaactaatatgatcccataatcatcttaatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagcacc |
11775 |
T |
|
| Q |
142 |
atttgaaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgtgcagagagttttgcatgacaaggcaaaaagaatgtga |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11776 |
atttgaaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgtgcagagagttttgcatgacaaggcaaaaaggatgtga |
11875 |
T |
|
| Q |
242 |
atccaaagtttttctatccaaaacttcttacacattgcatttgcaagagtactcataagtctattctggactcttttgaa---ctttgaaaatgtttgag |
338 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
11876 |
atccaaagtttttgtatccaaaacttcttacacattgcatttgcaagagtactcataagtctattctggactcttttggacttctttgaaaatgtttgag |
11975 |
T |
|
| Q |
339 |
gaaatttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaagtgattcaagcacatat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11976 |
gaaatttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaagtgattcaagcacatat |
12075 |
T |
|
| Q |
439 |
tttgcatga |
447 |
Q |
| |
|
||||||||| |
|
|
| T |
12076 |
tttgcatga |
12084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 3472 - 3594
Alignment:
| Q |
322 |
ctttgaaaatgtttgaggaaatttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaa |
421 |
Q |
| |
|
|||||||| |||||| ||||||||| || ||||||||| |||||||||||||| ||| || |||||||||| || | ||| |||||||||||| ||||| |
|
|
| T |
3472 |
ctttgaaagtgtttgtggaaatttgccacaaaatatttgtgttgttttgcaactgtactcttatttgagtaggggtctgtggaagtctctaactatttaa |
3571 |
T |
|
| Q |
422 |
gtgattcaagcacatattttgca |
444 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3572 |
gtgattcaagcacatattttgca |
3594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 11617 - 11652
Alignment:
| Q |
10 |
aacaatatcctagaaagatacaacaaaatgagcaac |
45 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11617 |
aacaatatcctggaaagatacaacaaaatgagcaac |
11652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 147 - 447
Target Start/End: Complemental strand, 12722389 - 12722087
Alignment:
| Q |
147 |
aaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgtgcagagagttttgcatgacaaggcaaaaagaatgtgaatcca |
246 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
12722389 |
aaatcagtacagaagccttat-caatcgaactgagaaggatggtccattacagaatgtgcagagagttttgtatgacaaggcaaaaaggatgtgaatcca |
12722291 |
T |
|
| Q |
247 |
aagtttttctatccaaaacttcttacacattgcatttgcaagagtactcataagtctattctggactcttttgaa---ctttgaaaatgtttgaggaaat |
343 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
12722290 |
aagtttttgtatccaaaacttcttacacattgcatttgcaagagtactcataagtctattctggactcttttggacttctttgaaaatgtttgaggaaat |
12722191 |
T |
|
| Q |
344 |
ttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaagtgattcaagcacatattttgc |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12722190 |
ttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaagtgattcaagcacatattttgc |
12722091 |
T |
|
| Q |
444 |
atga |
447 |
Q |
| |
|
|||| |
|
|
| T |
12722090 |
atga |
12722087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 147 - 299
Target Start/End: Complemental strand, 12715169 - 12715016
Alignment:
| Q |
147 |
aaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgtgc-agagagttttgcatgacaaggcaaaaagaatgtgaatcc |
245 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||| ||| |||| |
|
|
| T |
12715169 |
aaatcagtacagaagccgtattcaatcgaactgagaaggatggtccgttacaggatgtgccagacagttttgcatgacgaggcaaaaaggatgcaaatct |
12715070 |
T |
|
| Q |
246 |
aaagtttttctatccaaaacttcttacacattgcatttgcaagagtactcataa |
299 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||| |
|
|
| T |
12715069 |
aaagtttttgtatccaaaactccttacaaattgcatttgcaagaatactcataa |
12715016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 12710978 - 12710842
Alignment:
| Q |
42 |
caactaactaatatgatcccataatcatgttgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtacc |
141 |
Q |
| |
|
||||||||| ||||||||| |||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12710978 |
caactaactcatatgatcctgcaatcatctggatgattatttaactgcttaaggagcatttataaagatagattgacatttatatgataattgaagcacc |
12710879 |
T |
|
| Q |
142 |
atttgaaatcagtacagaagccttattcaatcgaact |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12710878 |
atttgaaatcagtacagaagccttattcaatcgaact |
12710842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 12722540 - 12722437
Alignment:
| Q |
42 |
caactaactaatatgatcccataatcatgttgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtacc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12722540 |
caactaactaatatgatcccataatcatctggatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagcacc |
12722441 |
T |
|
| Q |
142 |
attt |
145 |
Q |
| |
|
|||| |
|
|
| T |
12722440 |
attt |
12722437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 12710062 - 12709928
Alignment:
| Q |
173 |
cgaactgagaaggatggtccattacaggatgtg-cagagagttttgcatgacaaggcaaaaagaatgtgaatccaaag-tttttctatccaaaact-tct |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| || ||||||| ||||| ||||||||||| ||| |
|
|
| T |
12710062 |
cgaactgagaaggatggtccattacaggatgtgccaggcatttttgcatgacaaggcaaaaaggatgcgagtccaaagttttttttatccaaaactctct |
12709963 |
T |
|
| Q |
270 |
tacacattgcatttgcaagagtactcataagtcta |
304 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |
|
|
| T |
12709962 |
tacacattgcatttgcaatagtactcataaatcta |
12709928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 12733285 - 12733163
Alignment:
| Q |
322 |
ctttgaaaatgtttgaggaaatttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaa |
421 |
Q |
| |
|
|||||||| |||||| ||||||||| || ||||||||| |||||||||||||| ||| || |||||||||| || || ||| |||||||||||||||||| |
|
|
| T |
12733285 |
ctttgaaagtgtttgtggaaatttgccacaaaatatttgtgttgttttgcaactgtactcttatttgagtaggggtttgtggaagtctctaactgtttaa |
12733186 |
T |
|
| Q |
422 |
gtgattcaagcacatattttgca |
444 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12733185 |
gtgattcaagcacatattttgca |
12733163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 12715313 - 12715215
Alignment:
| Q |
50 |
taatatgatcccataatcatgttgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtaccatttgaa |
148 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||||| || |||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
12715313 |
taatatgatcccacaatcatttggatgattatttaactgcttaacgagcatttaggaggacagattgacattcatatgataattgaagcaccatttgaa |
12715215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 12722599 - 12722564
Alignment:
| Q |
10 |
aacaatatcctagaaagatacaacaaaatgagcaac |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12722599 |
aacaatatcctagaaagatacaacaaaatgagcaac |
12722564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 147 - 299
Target Start/End: Original strand, 9166 - 9319
Alignment:
| Q |
147 |
aaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgtgc-agagagttttgcatgacaaggcaaaaagaatgtgaatcc |
245 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9166 |
aaatcactacagaagccatattcaatcgaactgagaaggatggtccattacaggatgtgccagacagttttgcatgacgaggcaaaaagaatgtgaatct |
9265 |
T |
|
| Q |
246 |
aaagtttttctatccaaaacttcttacacattgcatttgcaagagtactcataa |
299 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9266 |
aaagtttttgtatgcaaaactccttacacattgcatttgcaagagtactcataa |
9319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 9014 - 9120
Alignment:
| Q |
42 |
caactaactaatatgatcccataatcatgttgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtacc |
141 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||||||| ||||||||| | ||||||||||||| || ||||||||||| ||||||||||||||| ||| |
|
|
| T |
9014 |
caactaactaatatgatcccacaatcatttggatgattacttaactgcttacggagcatttaggaggacagattgacattcatatgataattgaagcacc |
9113 |
T |
|
| Q |
142 |
atttgaa |
148 |
Q |
| |
|
||||||| |
|
|
| T |
9114 |
atttgaa |
9120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 9474 - 9596
Alignment:
| Q |
322 |
ctttgaaaatgtttgaggaaatttggcagaaaatatttttgttgttttgcaaccgtattcatatttgagtacggtttagtgaaagtctctaactgtttaa |
421 |
Q |
| |
|
|||||||| |||||| ||||||||| || ||||||||| |||||||||||||| ||| || |||||||||| || || ||| |||||||||||||||||| |
|
|
| T |
9474 |
ctttgaaagtgtttgtggaaatttgccacaaaatatttgtgttgttttgcaactgtactcttatttgagtaggggtttgtggaagtctctaactgtttaa |
9573 |
T |
|
| Q |
422 |
gtgattcaagcacatattttgca |
444 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9574 |
gtgattcaagcacatattttgca |
9596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 19713574 - 19713724
Alignment:
| Q |
147 |
aaatcagtacagaagccttattcaatcgaactgagaaggatggtccattacaggatgt--------gcagagagttttgcatgacaaggcaaaaagaatg |
238 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| || |
|
|
| T |
19713574 |
aaatcagtacggaagtcttattcaatcaaactgagaaggatggtccattacaggatgtgccagacggcagacacttttgcatgacaaggcaaaaaggttg |
19713673 |
T |
|
| Q |
239 |
tgaatccaaagtttttctatccaaaacttcttacacattgcatttgcaaga |
289 |
Q |
| |
|
||||||||||||| || ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
19713674 |
tgaatccaaagttattgtatccaaaaatccttgcacattgcattggcaaga |
19713724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 19713450 - 19713526
Alignment:
| Q |
72 |
tgatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagtaccatttgaa |
148 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
19713450 |
tgatgattatttaactgcttaaagagcatttaggaggataggctggcatttatatgataattgaagcaccatttgaa |
19713526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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