View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_13 (Length: 453)
Name: NF17083_low_13
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 35042824 - 35042398
Alignment:
| Q |
16 |
atgaacatgaaagatctaaaatgaggcagtggcgaaaattcattcgaaaagaggcactcaggcatatagacaagaaaaagaagcgggaaaaacgcacatt |
115 |
Q |
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| T |
35042824 |
atgaacatgaaagatctaaaatgaggcagtggcgaaaattcattcgaaaagaggcactcaggcatatagacaagaaaaagaagcgggaaaaacgcacatt |
35042725 |
T |
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| Q |
116 |
tgagtcacaagtcacaatccctcaaaacaaagaactaagaaccacatgtaggatccaagaatccaagttattcatgaagcactaccacatgtcgtatcag |
215 |
Q |
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| T |
35042724 |
tgagtcacaa-------tccctcaaaacaatgaactaaaaaccacatgtaggatccaagaatccaagttattcatgaagcactaccacatgtcgtatcag |
35042632 |
T |
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| Q |
216 |
acattccatcctcattaaatgctcactagtaagtgacgcaaaatgctataaaaatgacaacttagaggacacaattgtcaattgcaatcatcaagaacac |
315 |
Q |
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| T |
35042631 |
acattccatcctcattaaatgctcactagtaagtgacgccaaatgctataaaaatgacaacttagaggacacaattgtcaattgcaatcatcaagaacac |
35042532 |
T |
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| Q |
316 |
attccaaatactctgagaacaaggacaagattaaatgtcatttcaactcttcatagatctactaagactttgttt------------gggagaggaagga |
403 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| | ||||||| ||||| |
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| T |
35042531 |
attccaaatactttgagaacaaggacaagattaaatatcatttcaactcttcatagaactactaagattttgtctgggagtttggaagggagagtaagga |
35042432 |
T |
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| Q |
404 |
aagattttggagaattgggaatacaggagaaaat |
437 |
Q |
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| T |
35042431 |
aagattttggagaattgggaatacaggagaaaat |
35042398 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 36844554 - 36844599
Alignment:
| Q |
324 |
tactctgagaacaaggacaagattaaatgtcatttcaactcttcat |
369 |
Q |
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|||| ||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
36844554 |
tactttgagaacaagggcaagattaaatataatttcaactcttcat |
36844599 |
T |
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