View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_low_16 (Length: 414)
Name: NF17083_low_16
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 33628489 - 33628103
Alignment:
| Q |
19 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628489 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
33628390 |
T |
|
| Q |
119 |
tttagtctccggcnnnnnnn-tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtc |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33628389 |
tttagtctccggcaaaaaaaatataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtc |
33628290 |
T |
|
| Q |
218 |
aagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33628289 |
aagaatgtttgcgataacacaaatatcattatgaaatgcacagcaacagctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaa |
33628190 |
T |
|
| Q |
318 |
ttagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33628189 |
ttagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
33628103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 33610004 - 33609620
Alignment:
| Q |
19 |
aacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcc |
118 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| ||| |||||||||||||||| |||||||| ||| |||||||||||||| |||||| |
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|
| T |
33610004 |
aacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatggtgtacattgaatccaaaggaattcc |
33609905 |
T |
|
| Q |
119 |
tttagtctccggcnnnnnnn-tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtc |
217 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| || || |||||||| ||||| |||||||| ||| |
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|
| T |
33609904 |
tttagtctcaggcaagaaaaatataataaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataacattgtc |
33609805 |
T |
|
| Q |
218 |
aagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaa |
317 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||| || | ||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |||||| |
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|
| T |
33609804 |
aagaatgtttgtgatagcacaaatactattatgaattgtatagcaatagctatgctttgtcctgtggttcttatatttactgggaaaatctcacttggaa |
33609705 |
T |
|
| Q |
318 |
ttagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctt |
402 |
Q |
| |
|
| |||||||||||||||| ||| ||| |||||||||| |||| || ||||| | ||| |||||||| ||||||||||| ||||| |
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|
| T |
33609704 |
taagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacataatagcaccaatactaatattgcattcccctt |
33609620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 402
Target Start/End: Complemental strand, 33619260 - 33618902
Alignment:
| Q |
45 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnt-ataa |
143 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||| | |||||||| ||| |||||| ||||||| ||||||||| ||||| ||| |||| |
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|
| T |
33619260 |
tcttgtcctttaacataccgagaccaaaaccagtgtctgccccatatagtgtacattgactccaaaggaattcctttggtctcaggcaagaagaagataa |
33619161 |
T |
|
| Q |
144 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatat |
243 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| | || ||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
33619160 |
caaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagat |
33619061 |
T |
|
| Q |
244 |
cattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgac |
343 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||| |||||||||| |||| ||| ||| |
|
|
| T |
33619060 |
tattatgaattgcacagcaacagctatgctttgtcctgtggttcttatttttactgggaaaatctcacttggaataagccatgttaatggaccccatgac |
33618961 |
T |
|
| Q |
344 |
aaaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctt |
402 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
33618960 |
caaccaaaacctgcagagtagaaacacaatagcaccaataccactattgcattgccctt |
33618902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 163 - 404
Target Start/End: Complemental strand, 33623957 - 33623716
Alignment:
| Q |
163 |
aacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagca |
262 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| || |
|
|
| T |
33623957 |
aacccaacccgcatagaacaaaatggccccaaagtataactggcataacatagtcaagaatgtttgcgatagcacaaagaccattatgaaatgcacaaca |
33623858 |
T |
|
| Q |
263 |
actgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcat |
362 |
Q |
| |
|
|| ||||||||||||| | |||||| ||||| | || |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |
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|
| T |
33623857 |
acagctatgctttgtcgaatgcttcctatataaatggggaaaatctcagttggaattagccatgttagagggctccacgacaaatctaaacccgcagcac |
33623758 |
T |
|
| Q |
363 |
agaaacacattagtaccaataccaatattgcattgccctttg |
404 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
33623757 |
agaaacatattagtaccaatatcaatattgcattgccctttg |
33623716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 48 - 404
Target Start/End: Complemental strand, 33596548 - 33596191
Alignment:
| Q |
48 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taatga |
146 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || | |
|
|
| T |
33596548 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33596449 |
T |
|
| Q |
147 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
246 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | || |
|
|
| T |
33596448 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagat |
33596349 |
T |
|
| Q |
247 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaa |
346 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| || |
|
|
| T |
33596348 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaa |
33596249 |
T |
|
| Q |
347 |
ccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
404 |
Q |
| |
|
|||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33596248 |
ccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33596191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 404
Target Start/End: Complemental strand, 33603681 - 33603322
Alignment:
| Q |
46 |
cttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taat |
144 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || |
|
|
| T |
33603681 |
cttctactttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgat |
33603582 |
T |
|
| Q |
145 |
gaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatc |
244 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
33603581 |
aaatagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaag |
33603482 |
T |
|
| Q |
245 |
attatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgaca |
344 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| |
|
|
| T |
33603481 |
attatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagacc |
33603382 |
T |
|
| Q |
345 |
aaccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
404 |
Q |
| |
|
|||||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33603381 |
aaccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33603322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 48 - 404
Target Start/End: Complemental strand, 33589376 - 33589019
Alignment:
| Q |
48 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnta-taatga |
146 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| | | || | |
|
|
| T |
33589376 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33589277 |
T |
|
| Q |
147 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
246 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||| ||| | || |
|
|
| T |
33589276 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacataaacaagat |
33589177 |
T |
|
| Q |
247 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaa |
346 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| || |
|
|
| T |
33589176 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaa |
33589077 |
T |
|
| Q |
347 |
ccaaaacccgcagcatagaaacacattagtaccaataccaatattgcattgccctttg |
404 |
Q |
| |
|
|||||||| || || |||||||| | || |||||||||||| ||||||| ||||||| |
|
|
| T |
33589076 |
ccaaaacctgcggcgtagaaacatagtaaaaccaataccaatgttgcatttccctttg |
33589019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 139 - 372
Target Start/End: Complemental strand, 33563703 - 33563470
Alignment:
| Q |
139 |
tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacaca |
238 |
Q |
| |
|
|||||| || || ||||| ||||||| |||| || || |||||| || || ||| |||||||||| |||||||| ||||||||||| || || |||||| |
|
|
| T |
33563703 |
tataataaagagggtcatgacaacaatccaagcactatggaacaagaaagcaccatacttcaagtgacataacattgtcaagaatgtctgagacaacaca |
33563604 |
T |
|
| Q |
239 |
aatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactcc |
338 |
Q |
| |
|
||||| ||||||| ||||||| || ||||||||||||||||| |||| || || | |||||||| ||| ||||||||| |||| |||||||| || |
|
|
| T |
33563603 |
aatatagttatgaattgcacagaaatagctatgctttgtccagttgttctgattttcaaaggaaaaatttcacttggaattatccataatagaggacccc |
33563504 |
T |
|
| Q |
339 |
acgacaaaccaaaacccgcagcatagaaacacat |
372 |
Q |
| |
|
| ||| |||||||||| |||| ||||||||||| |
|
|
| T |
33563503 |
atgaccaaccaaaacctgcagagtagaaacacat |
33563470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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