View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17083_low_17 (Length: 412)

Name: NF17083_low_17
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17083_low_17
NF17083_low_17
[»] chr7 (7 HSPs)
chr7 (5-404)||(38195361-38195761)
chr7 (210-338)||(38176242-38176370)
chr7 (210-326)||(8178029-8178145)
chr7 (280-338)||(4097818-4097876)
chr7 (280-338)||(10486560-10486618)
chr7 (201-327)||(42415260-42415386)
chr7 (288-324)||(5460933-5460969)
[»] chr4 (3 HSPs)
chr4 (172-404)||(47813784-47814013)
chr4 (273-390)||(25790746-25790863)
chr4 (210-338)||(29542191-29542319)
[»] chr3 (6 HSPs)
chr3 (222-361)||(29123123-29123262)
chr3 (201-377)||(25500899-25501075)
chr3 (210-338)||(1527251-1527379)
chr3 (201-327)||(53920288-53920414)
chr3 (194-327)||(1930109-1930242)
chr3 (193-230)||(26924518-26924555)
[»] chr1 (5 HSPs)
chr1 (199-388)||(4816645-4816834)
chr1 (196-336)||(5299424-5299564)
chr1 (250-338)||(19023308-19023396)
chr1 (202-259)||(46496856-46496913)
chr1 (239-356)||(52176512-52176629)
[»] chr5 (3 HSPs)
chr5 (176-396)||(11468748-11468962)
chr5 (218-324)||(43391059-43391165)
chr5 (208-327)||(12186851-12186970)
[»] scaffold0094 (1 HSPs)
scaffold0094 (201-327)||(15221-15347)
[»] chr2 (2 HSPs)
chr2 (210-338)||(4318722-4318850)
chr2 (208-250)||(31015443-31015485)
[»] chr8 (3 HSPs)
chr8 (270-324)||(2704022-2704076)
chr8 (268-327)||(15074404-15074463)
chr8 (210-297)||(22642808-22642895)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 404
Target Start/End: Original strand, 38195361 - 38195761
Alignment:
Q  5 ttcggccattcatattctttgttgcattcctactagctctaaccatatccaggtaaatgtatggtactttgttccattattccctcctgtacaccagtta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38195361 ttcggccattcatattctttgttgcattcctactagctctaaccatatctaggtaaatgtatggtactttgttccattattccctcctgtacaccagtta 38195460  T
Q  105 aataatgttttcactagtaaattagtagttgattttcttatcctgtcacactagtttcnnnnnnnnn-gaagcttatattatttcatttcttcttaaaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  38195461 aataatgttttcactagtaaattagtagttgattttcttatcctgtcacactagtttctttttttttcgaagcttatattatttcatttcttcttaaaat 38195560  T
Q  204 agtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccgg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38195561 agtatcaatacaagatggaatcaaattgaacacttggtgactagcatgcaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccag 38195660  T
Q  304 atgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattggttattagttatgtcacctatgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38195661 atgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattggttattagttatgtcaccaatgc 38195760  T
Q  404 t 404  Q
    |    
T  38195761 t 38195761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 38176242 - 38176370
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 309  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  ||| ||||||||||  |  |||    
T  38176242 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 38176341  T
Q  310 cttatcttaaagtttggaaagtgttgtaa 338  Q
    |||||||||||||||| ||| ||||||||    
T  38176342 cttatcttaaagtttgtaaattgttgtaa 38176370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 8178029 - 8178145
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 309  Q
    |||||||||||||||| |||  || || ||| ||||||||||||| |||| | ||| ||||||  |||| || ||| |||||||||||||||     |||    
T  8178029 aatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaa 8178128  T
Q  310 cttatcttaaagtttgg 326  Q
    |||||||||||||||||    
T  8178129 cttatcttaaagtttgg 8178145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 4097876 - 4097818
Alignment:
Q  280 gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 338  Q
    ||||||||||||||| |||||  ||| |||||||||||||||||||| || ||||||||    
T  4097876 gcgacataatttgctagtctcgtgataaaacttatcttaaagtttgggaattgttgtaa 4097818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 10486560 - 10486618
Alignment:
Q  280 gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 338  Q
    ||||||||||||||||||||||  |  ||||||||||||||||||| ||| ||||||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa 10486618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 42415386 - 42415260
Alignment:
Q  201 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 300  Q
    |||||| |||||| | |||||||||||||  ||| | ||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  42415386 aatagtttcaatatatgatggaatcaaatcaaactcctggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 42415287  T
Q  301 cggatgaaacttatcttaaagtttgga 327  Q
    |  |  ||||||||| |||||||||||    
T  42415286 ctaacaaaacttatcctaaagtttgga 42415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 5460969 - 5460933
Alignment:
Q  288 atttgcttgtctccggatgaaacttatcttaaagttt 324  Q
    ||||||||||||||  |||||||||||||||||||||    
T  5460969 atttgcttgtctcctaatgaaacttatcttaaagttt 5460933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 47813784 - 47814013
Alignment:
Q  172 gaagcttatattatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagcta 271  Q
    |||||||||||||||||||||||   |||||||||||||||| || ||| ||||||||| || | ||||||||||||||||||||||| ||  ||| |||    
T  47813784 gaagcttatattatttcatttct---taaaatagtatcaatataaaatgaaatcaaattaaatatttggtgactagcatacaactttgccgttcgaacta 47813880  T
Q  272 aactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaa 371  Q
    ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47813881 aacaatggacgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctgcaagtagctaatatgtttccaaa 47813980  T
Q  372 ttcagattggttattagttatgtcacctatgct 404  Q
    ||||||||| |  |||||| ||||||| |||||    
T  47813981 ttcagattgatctttagttctgtcaccaatgct 47814013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 390
Target Start/End: Complemental strand, 25790863 - 25790746
Alignment:
Q  273 actatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaat 372  Q
    |||||||||||||||||||||||| || |  ||||| ||||||||||| |||||| |||||| ||||||| || |||||||| |||  ||||| ||||||    
T  25790863 actatgagcgacataatttgcttgactacatatgaagcttatcttaaaatttggatagtgttataacaaaactgtacaagtacctataatgttgccaaat 25790764  T
Q  373 tcagattggttattagtt 390  Q
    ||| ||||||||||||||    
T  25790763 tcatattggttattagtt 25790746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 338
Target Start/End: Complemental strand, 29542319 - 29542191
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 309  Q
    |||||||||||||||| |||  || || ||||||| ||| ||||| |||| | ||| |||||| | ||| |||||||||||||||||| |||  |  |||    
T  29542319 aatacaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaa 29542220  T
Q  310 cttatcttaaagtttggaaagtgttgtaa 338  Q
     ||||||||||||||| ||| ||||||||    
T  29542219 tttatcttaaagtttgaaaattgttgtaa 29542191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 29123262 - 29123123
Alignment:
Q  222 aatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaag 321  Q
    |||||||||||| | ||||||||| ||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |    
T  29123262 aatcaaattgaatatttggtgactggcatacaactttgccgcccgagctaaattatgggcggcataatttgcttgtctccggatgaaacttatcttaacg 29123163  T
Q  322 tttggaaagtgttgtaacaaatctctacaagtagctaata 361  Q
    ||| |||||||||||||||||||||||||||||| |||||    
T  29123162 tttagaaagtgttgtaacaaatctctacaagtagttaata 29123123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 25501075 - 25500899
Alignment:
Q  201 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 300  Q
    |||||| ||||||||||||||||||||||  || ||| |||||| ||||||||| ||||  ||||  ||||||||||| |||||| ||||||||||||||    
T  25501075 aatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaatttgcttgtctc 25500976  T
Q  301 cggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcaga 377  Q
    |  |   || ||||||||||||||||||| || | ||||| | ||||||||||||| |  || || |||||||||||    
T  25500975 cttacataatttatcttaaagtttggaaaatgatataacagacctctacaagtagccatgatattcccaaattcaga 25500899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 338
Target Start/End: Complemental strand, 1527379 - 1527251
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 309  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  ||| ||||||||||  |  |||    
T  1527379 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 1527280  T
Q  310 cttatcttaaagtttggaaagtgttgtaa 338  Q
    |||||||||||||||| ||| ||||||||    
T  1527279 cttatcttaaagtttgtaaattgttgtaa 1527251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 53920414 - 53920288
Alignment:
Q  201 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 300  Q
    |||||| |||||||||||||||||||||   ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| ||||||||     
T  53920414 aatagtttcaatacaagatggaatcaaaacaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctt 53920315  T
Q  301 cggatgaaacttatcttaaagtttgga 327  Q
    |  |  ||||| |||||||||||||||    
T  53920314 ctaacaaaactcatcttaaagtttgga 53920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 327
Target Start/End: Complemental strand, 1930242 - 1930109
Alignment:
Q  194 ttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgc 293  Q
    |||| |||| ||| ||||||||||||||||||||||  |||  |||||||| |||||  ||  ||| |||||  |||||| |||||| ||||||||| ||    
T  1930242 ttctcaaaagagtctcaatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgacgcccctgctaaagtatgagtgacataattagc 1930143  T
Q  294 ttgtctccggatgaaacttatcttaaagtttgga 327  Q
     | |||||     |||||||| ||||||||||||    
T  1930142 atttctcctagcaaaacttattttaaagtttgga 1930109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 26924555 - 26924518
Alignment:
Q  193 cttcttaaaatagtatcaatacaagatggaatcaaatt 230  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  26924555 cttcttaaaagagtctcaatacaagatggaatcaaatt 26924518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 199 - 388
Target Start/End: Complemental strand, 4816834 - 4816645
Alignment:
Q  199 aaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtc 298  Q
    |||||||||  |||| |||||| ||||||||  || |||||||||| ||||||||| |||| | |||  ||||| ||||| |||||||||||||||||||    
T  4816834 aaaatagtagtaatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtc 4816735  T
Q  299 tccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagattggttattag 388  Q
    |||  |   || ||||||||||||||||||| |||||||||||| |||||||| |||| |   | || ||||||||| ||||||||||||    
T  4816734 tccttacataatttatcttaaagtttggaaaatgttgtaacaaagctctacaattagccatgctattaccaaattcaaattggttattag 4816645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 336
Target Start/End: Complemental strand, 5299564 - 5299424
Alignment:
Q  196 cttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgctt 295  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||| |||| |||| |||| | |||  ||||| | ||| |||||  |||| ||||    
T  5299564 cttaaaatagtagcaatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagcaatgggcgaccgaattcgctt 5299465  T
Q  296 gtctccggatgaaacttatcttaaagtttggaaagtgttgt 336  Q
    |||| |  |  ||| ||||||||||||||||||| ||||||    
T  5299464 gtcttctaacaaaatttatcttaaagtttggaaattgttgt 5299424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 19023308 - 19023396
Alignment:
Q  250 tacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 338  Q
    ||||| |||| | ||| |||||| ||||||| || |||||||| ||||||||  |  ||||||||||||||||||| ||| ||||||||    
T  19023308 tacaattttgactccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa 19023396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 46496913 - 46496856
Alignment:
Q  202 atagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttg 259  Q
    |||||| |||||||||||||||||||||  || || ||||||| ||||||||| ||||    
T  46496913 atagtagcaatacaagatggaatcaaataaaaaacctggtgacgagcatacaaatttg 46496856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 52176629 - 52176512
Alignment:
Q  239 ggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa 338  Q
    |||||| |||||||||||||||||| |    ||||||||| | |||| |||||||||| |||   |  ||||||| ||||||||||||||| || | | |    
T  52176629 ggtgacgagcatacaactttgtcgctcttcttaaactatgggtgacacaatttgcttgactctttacaaaacttaccttaaagtttggaaaatgatatga 52176530  T
Q  339 caaatctctacaagtagc 356  Q
    |||| |||| ||||||||    
T  52176529 caaagctctgcaagtagc 52176512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 396
Target Start/End: Complemental strand, 11468962 - 11468748
Alignment:
Q  176 cttatattatttcatttcttcttaaaatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaact 275  Q
    |||||||||||||||| |||  ||||||||||| |||| ||||||||||||| ||||| | ||||||||||||||||||||||  || |  |||| |  |    
T  11468962 cttatattatttcatt-ctt--taaaatagtattaatataagatggaatcaa-ttgaatatttggtgactagcatacaactttaccgtcttagctgat-t 11468868  T
Q  276 atgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattca 375  Q
    ||  |||| ||||||||||||| | | |||||||||||| |||||||||| ||| |||||||| ||||| |||| | || |||  |||||| |||||||     
T  11468867 ataggcgatataatttgcttgttttcagatgaaacttattttaaagtttgaaaaatgttgtaataaatccctactaatatctataatgttttcaaattcg 11468768  T
Q  376 gattggttattagttatgtca 396  Q
    ||||||||| |||||||||||    
T  11468767 gattggtta-tagttatgtca 11468748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 324
Target Start/End: Original strand, 43391059 - 43391165
Alignment:
Q  218 atggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatctt 317  Q
    ||||||||||||  || || || |||||||||||||  |||| | |||  |||||| |||| ||||||||||||||||||||||| || ||||||||| |    
T  43391059 atggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataatttgcttgtctccgaataaaacttatcat 43391158  T
Q  318 aaagttt 324  Q
    |||||||    
T  43391159 aaagttt 43391165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 12186970 - 12186851
Alignment:
Q  208 tcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatga 307  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| || |  || | ||   ||||| ||||| |||||  |||| ||||| ||||  |  |    
T  12186970 tcaatacaagatggaatcaaatcaaacacttggtgacgagcatgcatccgtgacacctttgctaagctatgggcgacggaattcgcttgcctcctaacaa 12186871  T
Q  308 aacttatcttaaagtttgga 327  Q
    ||||||||||||||||||||    
T  12186870 aacttatcttaaagtttgga 12186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 327
Target Start/End: Complemental strand, 15347 - 15221
Alignment:
Q  201 aatagtatcaatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctc 300  Q
    |||||| |||||| || ||||||| ||||  ||| ||||||||| ||||| |||  | | ||||| ||||||  ||||||||||| |||| |||||||||    
T  15347 aatagtttcaatataaaatggaattaaatcaaactcttggtgacgagcattcaatctagacgccctagctaacgtatgagcgacaaaattagcttgtctc 15248  T
Q  301 cggatgaaacttatcttaaagtttgga 327  Q
    |  |  |||||||||||||||||||||    
T  15247 ctaacaaaacttatcttaaagtttgga 15221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 4318722 - 4318850
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaa 309  Q
    ||||||||||||||||||||  || |||||||||| ||| |  ||  ||| | ||| ||| |||||||||||||||  |||| |||||||||  |  |||    
T  4318722 aatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaacatttacttgtctcctaacaaaa 4318821  T
Q  310 cttatcttaaagtttggaaagtgttgtaa 338  Q
    |||||||||||||||| ||| | ||||||    
T  4318822 cttatcttaaagtttgtaaatttttgtaa 4318850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 31015443 - 31015485
Alignment:
Q  208 tcaatacaagatggaatcaaattgaacacttggtgactagcat 250  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  31015443 tcaatacaagatggaatcaaatcaaacacttggtgacgagcat 31015485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 2704022 - 2704076
Alignment:
Q  270 taaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagttt 324  Q
    |||| |||||||||||||||||||||||||||  |  ||||||||||||||||||    
T  2704022 taaagtatgagcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 2704076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 15074404 - 15074463
Alignment:
Q  268 gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttgga 327  Q
    |||| ||||||||||||| ||||||||||||| |  |  |||||||||||||||||||||    
T  15074404 gctatactatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaagtttgga 15074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 22642808 - 22642895
Alignment:
Q  210 aatacaagatggaatcaaattgaacacttggtgactagcatacaactttgtcgcccgagctaaactatgagcgacataatttgcttgt 297  Q
    ||||||||||| ||||||||  || |||||||||||||||||||| || | | |||  ||||| | ||| ||||||||||||| ||||    
T  22642808 aatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataatttgtttgt 22642895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University