View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_low_2 (Length: 726)
Name: NF17083_low_2
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 18 - 677
Target Start/End: Original strand, 8594315 - 8594974
Alignment:
| Q |
18 |
atttcaattagtaaaaatgtcttttttcaatataaaaatgtctgttgttacttctaatattcttaatgtgaaactttacaagtcttttttcaattatatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
8594315 |
atttcaattagtaaaaatgtcttttttcaatataaaaatgtctgttgttacttctaatattcttaatgtgaaactttaccatttttttttcaattatatg |
8594414 |
T |
|
| Q |
118 |
tgccaagcactagcagtatatggagttcatgccaaggcaaaggataactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8594415 |
tgccaagcactagcagtatatggagttcatgccaaggcaaaggataactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaag |
8594514 |
T |
|
| Q |
218 |
gcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatatggaatttacatagtgaagcatcaag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8594515 |
gcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatatggaatttacatagtgaagcatcaag |
8594614 |
T |
|
| Q |
318 |
gattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataataccatgtaattcttaaaaggggattctgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8594615 |
gattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataataccatgtaattcttaaaagggtattctgt |
8594714 |
T |
|
| Q |
418 |
agcactatattgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaacactattgataagcaagctcatgcgcgcgaaaattgtttt |
517 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8594715 |
agcgctatattgtagtggaatttgaacacatcactattttatgtgatttgcgattgacaacactattgataagcaagcgcatgcgcgcgaaaattgtttt |
8594814 |
T |
|
| Q |
518 |
acatattgcatttcaacttcacaaaaaccttatgaaatttatctacggaatatttatgaaccatcacggcgtcattgctataatcttttctgttagtttg |
617 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8594815 |
acatattgcatttcaacctcacaaaaaccttatgaaatttatttacggaatatttatgaaccatcacggcgtcattgctataatcttttctgttaatttg |
8594914 |
T |
|
| Q |
618 |
catcctttgttcacgaatgtagattttttcatggaacatagcaagcttgtcactcgacag |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8594915 |
catcctttgttcacgaatgtagattttttcatggaacatagcaagcttgtcactcgacag |
8594974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 8579458 - 8579348
Alignment:
| Q |
163 |
aactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcct |
262 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| |||||||||||| |||||||| |||||| |||||||||| ||| |||||||||||||| || |
|
|
| T |
8579458 |
aactcgaaatgagctgggtgtgcgatgaatcaaaccgtcaacatgaaaaggtaaggcagggtgtactctgagttacttttatgcaatgacatatttttct |
8579359 |
T |
|
| Q |
263 |
ctcaattactt |
273 |
Q |
| |
|
|||||||||| |
|
|
| T |
8579358 |
ttcaattactt |
8579348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 8599020 - 8599087
Alignment:
| Q |
168 |
gaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagt |
235 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |||||| | ||||||| |||| |
|
|
| T |
8599020 |
gaaatgagctgggtgtgtgaggaatcaaaccgtcaacatgaaaaggtaaggcatggtgtacttcgagt |
8599087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 19868480 - 19868585
Alignment:
| Q |
168 |
gaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaa |
267 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| || |||||||||||||| | |||| |
|
|
| T |
19868480 |
gaaatgagctgggtgtgtgaggaatcaaaccgtcagaatgaaaaggtaaggcagggtgtactttgagttacttttaaacaatgacatatttttccttcaa |
19868579 |
T |
|
| Q |
268 |
ttactt |
273 |
Q |
| |
|
|||||| |
|
|
| T |
19868580 |
ttactt |
19868585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 19868746 - 19868807
Alignment:
| Q |
328 |
atgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatac |
390 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
19868746 |
atgattagcatttggaagtaaaagtaattgagccaa-ccttgaataaggcaatacaataatac |
19868807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 27010049 - 27010110
Alignment:
| Q |
428 |
tgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaacactattgataa |
489 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
27010049 |
tgtagtagaatttgaacaaatcactatttaatgcaatttgtgattgacaacactattgataa |
27010110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 3015643 - 3015672
Alignment:
| Q |
428 |
tgtagtggaatttgaacacatcactatttt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3015643 |
tgtagtggaatttgaacacatcactatttt |
3015672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 8856831 - 8856893
Alignment:
| Q |
417 |
tagcactatattgtagtggaatttgaacacatcactattttatgcgatttgcgattgacaaca |
479 |
Q |
| |
|
||||||| ||||||||||||||||||||| | | |||||| ||||||| || ||||||||||| |
|
|
| T |
8856831 |
tagcactgtattgtagtggaatttgaacaaaccgctatttcatgcgatctgtgattgacaaca |
8856893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University