View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_20 (Length: 388)
Name: NF17083_low_20
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 3659202 - 3659576
Alignment:
| Q |
1 |
tcatgcaagtatattctagttcatgtcatgtctacagatcatagctccacaactcaatgtctcttgtggtttcattttgttgtgtcacgcgaggagcccg |
100 |
Q |
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| T |
3659202 |
tcatgcaagtatattctagttcatgtcatgactacatatcatagctccacaactcaatgtctcttgtggtttcactatgttgtgtcatgagaggatcccg |
3659301 |
T |
|
| Q |
101 |
agggatcacccacattagacaagagcagccacacaaatgagatagacacca----caattatctaaatgccaattaaagtggaacataacaaatccattt |
196 |
Q |
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| T |
3659302 |
agggaccacccgcattagacaagagcaaccacacaaatgagatagacaccaaccacacttatctaaattccaattgaagtggaacataacaaatccattt |
3659401 |
T |
|
| Q |
197 |
atgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaattctcctagaatacaatcaaacattacaaat |
296 |
Q |
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| T |
3659402 |
at-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaattgtcctagaatccaatcaaacattacaaat |
3659500 |
T |
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| Q |
297 |
caaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgcctttactcttca |
372 |
Q |
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| T |
3659501 |
caaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttcacgcctttactcttca |
3659576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 167 - 372
Target Start/End: Original strand, 3653106 - 3653310
Alignment:
| Q |
167 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
265 |
Q |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
266 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
365 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
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| Q |
366 |
ctcttca |
372 |
Q |
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||||||| |
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| T |
3653304 |
ctcttca |
3653310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 3657199 - 3657245
Alignment:
| Q |
254 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaa |
300 |
Q |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaa |
3657245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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