View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_26 (Length: 341)
Name: NF17083_low_26
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 17151333 - 17151017
Alignment:
| Q |
11 |
atgaacttcagcaaaaataggctttaaaaagaacattcaatcaagaccacctacccaattcaatcatataattctctccattcctcctctaagctctgac |
110 |
Q |
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| T |
17151333 |
atgaacttcagcaaaaataggctttaaaaagaacattcaatcaagaccacctacccaattcaatcatataattctctccattcctcctctaagctctgac |
17151234 |
T |
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| Q |
111 |
aaattttatgaaagtaacctgtaaaagtggccaatcatcacatccagctaatactctt-gcccttagttagtcctacaaaggaacattgattctttgttt |
209 |
Q |
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| T |
17151233 |
aaattttatgaaagtaacctgtaaaagtggccaatcatcacatccagctaatactctttgcccttagttagtcctacaaaggaacattgattctttgttt |
17151134 |
T |
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| Q |
210 |
gagattgcatgttgtgtagctattgcactatagcaacttgaattgtacttgcacatcctttacttcatcataattaaaatcaactaaagatgttacactt |
309 |
Q |
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| T |
17151133 |
gagattgcatgttgtgtagctattgcactatagcaacttgaattgtacttgcacatcctttacttcatcataattaaaatcaactaaagatgttacactt |
17151034 |
T |
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| Q |
310 |
aggtgtgtaccattact |
326 |
Q |
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| T |
17151033 |
aggtgtgtaccattact |
17151017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 317
Target Start/End: Original strand, 25927258 - 25927431
Alignment:
| Q |
142 |
caatcatcacatccagct-aatactcttgcccttagttagtcctacaaaggaacattgattctttgtttgagattgcatgttgtgtagctattgcactat |
240 |
Q |
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||||||||||||||| || |||||||||||| | | ||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
25927258 |
caatcatcacatccaacttaatactcttgcc-tcatttagtcctagaaagggacattgatttgttgtttgagattgcatgctgtgtagctattgagctat |
25927356 |
T |
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| Q |
241 |
agcaacttgaattgtacttgcacatcctttacttcatcataattaaaatcaactaaagatgttacacttaggtgtgt |
317 |
Q |
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| ||||||||| | ||| || |||||||||| || |||||| |||||||||||||||||||||||||||||||| |
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| T |
25927357 |
aacaacttgaaatttacgtg--tatcctttactacactataattgaaatcaactaaagatgttacacttaggtgtgt |
25927431 |
T |
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