View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17083_low_27 (Length: 339)

Name: NF17083_low_27
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17083_low_27
NF17083_low_27
[»] chr7 (7 HSPs)
chr7 (18-329)||(19778742-19779053)
chr7 (17-322)||(19888329-19888634)
chr7 (117-329)||(19879567-19879779)
chr7 (175-310)||(19351776-19351911)
chr7 (216-310)||(19357087-19357181)
chr7 (215-327)||(19721196-19721305)
chr7 (245-310)||(19598578-19598643)
[»] chr6 (1 HSPs)
chr6 (18-318)||(14748548-14748847)
[»] chr3 (2 HSPs)
chr3 (103-322)||(32579563-32579785)
chr3 (192-316)||(12735613-12735737)
[»] scaffold0464 (1 HSPs)
scaffold0464 (192-316)||(7193-7317)
[»] chr2 (3 HSPs)
chr2 (210-327)||(18909608-18909722)
chr2 (210-327)||(18914356-18914470)
chr2 (198-327)||(18921492-18921618)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 19779053 - 19778742
Alignment:
Q  18 caatccatattacccaatacgtagtaaggatcgttaggaatggcgacattcctcaatgggtagtaaggttcgaagggtgtgacggttaacggagcctcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19779053 caatccatattacccaatacgtagtaaggatcgttaggaatggcgacattcctcaatgggtagtaaggttcgaagggtgtgacgattaacggagcctcaa 19778954  T
Q  118 gcaaatgacttacgggaaagggtacgacactgcaattggactggtcttcagacgacaggtctgaaaccagtgcgaggtgtgtgttccgctgcgatcgctg 217  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19778953 gcaaatgacttacgggaaagggtaccacactgcaattggactggtcttcagacgacaggtctgaaaccagtgcgaggtgtgtgttccgctgcgatcgctg 19778854  T
Q  218 aagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19778853 aagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtgac 19778754  T
Q  318 aggatgtctgtg 329  Q
    ||||||||||||    
T  19778753 aggatgtctgtg 19778742  T

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Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 19888329 - 19888634
Alignment:
Q  17 acaatccatattacccaatacgtagtaaggatcgttaggaatggcgacattcctcaatgggtagtaaggttcgaagggtgtgacggttaacggagcctca 116  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||    
T  19888329 acaatccatattacccaatacgtagtaaggatcatcaggaatggcgacattcctcaataggtggtaaggttcgaagggtgtgattgttaacggagcctca 19888428  T
Q  117 agcaaatgacttacgggaaagggtacgacactgcaattggactggtcttcagacgacaggtctgaaaccagtgcgaggtgtgtgttccgctgcgatcgct 216  Q
    | |||||||||||| |||||||||||||||||| ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||| |||| ||||    
T  19888429 atcaaatgacttaccggaaagggtacgacactgaaattggactcgtcgtcagatgaccggtctgaaaccagtgtgaggtgtgtgttccgcggcgaacgct 19888528  T
Q  217 gaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtga 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19888529 gaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgtga 19888628  T
Q  317 caggat 322  Q
    ||||||    
T  19888629 caggat 19888634  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 117 - 329
Target Start/End: Original strand, 19879567 - 19879779
Alignment:
Q  117 agcaaatgacttacgggaaagggtacgacactgcaattggactggtcttcagacg---acaggtctgaaaccagtgcgaggtgtgtgttccgctgcgatc 213  Q
    |||||| |||| || ||||| ||||||||||||||||   ||| ||||| ||| |   || ||| |||||||| ||| | ||||||||||| | | ||||    
T  19879567 agcaaacgactaacaggaaatggtacgacactgcaatccaactcgtctttagatgtggaccggtttgaaaccattgctaagtgtgtgttccacggggatc 19879666  T
Q  214 gctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaagtcg 313  Q
    | |||||||||| |||||| |||| ||||| |   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19879667 gatgaagatgcaatttggctaaggcaggatta---gaaattagggttttccaagatttgcaaacacatttgaattgcataagagttttgacaggaagtcg 19879763  T
Q  314 tgacaggatgtctgtg 329  Q
    ||| ||||||||||||    
T  19879764 tgaaaggatgtctgtg 19879779  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 19351776 - 19351911
Alignment:
Q  175 ggtctgaaaccagtgcgaggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgca 274  Q
    |||||||||  ||||| ||||| ||||||||  |||| || | ||| |||| ||||| ||||||||||||||||||||| |||||| |||| ||||| ||    
T  19351776 ggtctgaaaatagtgctaggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttaca 19351875  T
Q  275 aacacatttgaattgcataagagttttgacaggaag 310  Q
    ||||||||||||||||||||||||||||||||||||    
T  19351876 aacacatttgaattgcataagagttttgacaggaag 19351911  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 19357181 - 19357087
Alignment:
Q  216 tgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaag 310  Q
    ||||| |||| ||||| |||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  19357181 tgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgcaaacgcatttgaattgcatcagagttttgacgggaag 19357087  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 327
Target Start/End: Complemental strand, 19721305 - 19721196
Alignment:
Q  215 ctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgt 314  Q
    ||||||| ||| |||||||||||  ||||||   || |||||||||||| | |||||||| |||||||| | |||||| |||||||||| |||||| |||    
T  19721305 ctgaagacgcactttggcgaaggcgggatca---gagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgt 19721209  T
Q  315 gacaggatgtctg 327  Q
    || ||||| ||||    
T  19721208 gataggatttctg 19721196  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 19598578 - 19598643
Alignment:
Q  245 atgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaag 310  Q
    |||||| |||||||||||||| || ||||| || ||||||||||||| |||||  || ||||||||    
T  19598578 atgagagattagggttttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaag 19598643  T

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Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 14748847 - 14748548
Alignment:
Q  18 caatccatattacccaatacgtagtaaggatcgttaggaatggcgacattcctcaatgggtagtaaggttcgaagggtgtgacggttaacggagcctcaa 117  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||| | |||||||||| ||||||||||||  ||||||  || | ||||||||||||| |    
T  14748847 caatccatattactcaaaaggtagtaaggatcgttgggaatggcaatattcctcaataggtagtaaggttataagggtacgatgattaacggagcctcga 14748748  T
Q  118 gcaaatgacttacgggaaagggtacgacactgcaattggactggtcttcagac---gacaggtctgaaaccagtgcgaggtgtgtgttccgctgcgatcg 214  Q
    |||||| |||||| |  || |||||||||||  |||  |||| ||| ||||||   | | ||| ||||||||||||||||||||||||||||   |||||    
T  14748747 gcaaattacttactgagaaaggtacgacactaaaatcagactcgtcctcagacatggtctggtatgaaaccagtgcgaggtgtgtgttccgc---gatcg 14748651  T
Q  215 ctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaagtcgt 314  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14748650 ctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacagggagtcgt 14748552  T

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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 322
Target Start/End: Original strand, 32579563 - 32579785
Alignment:
Q  103 ttaacggagcctcaagcaaatgacttacgggaaagggtacgacactgcaattggactggtcttcagac---gacaggtctgaaaccagtgcgaggtgtgt 199  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||||||||||  | || |||||| |     ||| |||||||||  | ||||||||| ||    
T  32579563 ttaacggagcctcgagcaaatgagttacaggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcgaggtgggt 32579662  T
Q  200 gttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagtt 299  Q
    ||||||  ||||||| |||||||| | ||||||||||   ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32579663 gttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataagagtt 32579762  T
Q  300 ttgacaggaagtcgtgacaggat 322  Q
    ||||||||||| ||||| |||||    
T  32579763 ttgacaggaaggcgtgataggat 32579785  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 12735613 - 12735737
Alignment:
Q  192 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgca 291  Q
    ||||| ||||||||  |||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12735613 aggtgggtgttccgaggcgatcgccgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaattgca 12735712  T
Q  292 taagagttttgacaggaagtcgtga 316  Q
    | | |||||||||||||||||||||    
T  12735713 tcaaagttttgacaggaagtcgtga 12735737  T

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Target: scaffold0464 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 7317 - 7193
Alignment:
Q  192 aggtgtgtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgca 291  Q
    ||||| ||||||||  ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  7317 aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca 7218  T
Q  292 taagagttttgacaggaagtcgtga 316  Q
    | |||||||||||||||||||||||    
T  7217 tcagagttttgacaggaagtcgtga 7193  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 327
Target Start/End: Original strand, 18909608 - 18909722
Alignment:
Q  210 gatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaa 309  Q
    ||||| ||||| |||| |||||||||| ||||||   ||||||||||||||||| | ||||||||||| ||||| | |||||| ||||||||||||||||    
T  18909608 gatcggtgaaggtgcaatttggcgaagaaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaa 18909704  T
Q  310 gtcgtgacaggatgtctg 327  Q
    ||||||| ||||| ||||    
T  18909705 gtcgtgaaaggatttctg 18909722  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 327
Target Start/End: Original strand, 18914356 - 18914470
Alignment:
Q  210 gatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagagttttgacaggaa 309  Q
    ||||| ||||| |||| |||| ||||||||||||   ||||||||||||||||| | ||||||||||| ||||| | |||||| ||||||||||||||||    
T  18914356 gatcgatgaaggtgcaatttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagagttttgacaggaa 18914452  T
Q  310 gtcgtgacaggatgtctg 327  Q
    |||| || ||||| ||||    
T  18914453 gtcgagaaaggatttctg 18914470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 18921492 - 18921618
Alignment:
Q  198 gtgttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccacgatttgcaaacacatttgaattgcataagag 297  Q
    ||||||||| ||||||| ||||| |||| |||| ||||||||||||   ||||||||||||||||| | ||||||||||| ||||| | |||||| ||||    
T  18921492 gtgttccgcggcgatcgatgaaggtgcattttgacgaaggaaggat---gagaaattagggttttcaatgatttgcaaacgcatttcatttgcatcagag 18921588  T
Q  298 ttttgacaggaagtcgtgacaggatgtctg 327  Q
    |||| || ||||| ||||| ||||| ||||    
T  18921589 tttttactggaagacgtgaaaggatttctg 18921618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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