View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_3 (Length: 691)
Name: NF17083_low_3
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_3 |
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| [»] scaffold0635 (2 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 1808 - 1435
Alignment:
| Q |
10 |
aatataagaataaaaaatttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatcttggttgagttaa |
109 |
Q |
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| T |
1808 |
aatataagaataaaa--tttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatctcggttgagttaa |
1711 |
T |
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| Q |
110 |
agcaaaaacaagaagtaaaatagtgatatcttgannnnnnnnnaatcattcaattctaggaagataatttagttacttaatcttcaatcaatttattttt |
209 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
1710 |
agcaaaaacaaaaagtaaaatagtgatatcttgatttttttt-aatcatccaattctaggaagataatttgtttacttaatcttcaatcaatttattgtt |
1612 |
T |
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| Q |
210 |
aattgcattatcgtcctttattttcgctgaaacatgatttttacccttccatttctaaatatgagattttagtctactagctaatttaatattgtattgt |
309 |
Q |
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| T |
1611 |
aattgcattatcatctcttattttcacagaaacatgatttttacccttccatttctaaatatgagattttagtctcttatctaattttatattgtattgc |
1512 |
T |
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| Q |
310 |
ttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggta |
386 |
Q |
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| T |
1511 |
tggaaaaatggtgttggagattacttgttgattagggtgggttatgacataaagtcttagcagcaaaatatggggta |
1435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 433 - 674
Target Start/End: Complemental strand, 1435 - 1181
Alignment:
| Q |
433 |
aagaatatttgtgatgttaaagagggagtaggtgtgcatgaggtaggttttggtttgaggttaattttgtgtgtcacgtaggtaatggtgaaagttcttc |
532 |
Q |
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| T |
1435 |
aagaacatttgtgatgttaaaaagggagtaggcgtgcctgaggcaggtt--ggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctc |
1338 |
T |
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| Q |
533 |
tttttgaaacgatatttggttagaaggggtttcattatgtcttggat-ttagtcatttgtttgatttgtttgttgactctaatataattgttg------- |
624 |
Q |
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||||||||||||| |||| | ||||||| |||||||||| || || ||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
1337 |
tttttgaaacgatccttggctggaagggggttcattatgtgttaaatattagttgtatgtttgatttgtttgttgactctagtataattgttgctgagac |
1238 |
T |
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| Q |
625 |
-------ttggggtgggggattgaggacagaggttggagatggaggaggagactttt |
674 |
Q |
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| T |
1237 |
aaggagattggggtggggggttgacgacagaggttggagatggaggaggagactttt |
1181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 10106976 - 10107349
Alignment:
| Q |
10 |
aatataagaataaaaaatttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatcttggttgagttaa |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10106976 |
aatataagaataaaa--tttgagccaggaggtttaattaattttagacaaaattttgagtaatctgcaaaaggttttcaattctatctcggttgagttaa |
10107073 |
T |
|
| Q |
110 |
agcaaaaacaagaagtaaaatagtgatatcttgannnnnnnnnaatcattcaattctaggaagataatttagttacttaatcttcaatcaatttattttt |
209 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
10107074 |
agcaaaaacaaaaagtaaaatagtgatatcttgatttttttt-aatcatccaattctaggaagataatttgtttacttaatcttcaatcaatttattgtt |
10107172 |
T |
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| Q |
210 |
aattgcattatcgtcctttattttcgctgaaacatgatttttacccttccatttctaaatatgagattttagtctactagctaatttaatattgtattgt |
309 |
Q |
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| T |
10107173 |
aattgcattatcatctcttattttcacagaaacatgatttttacccttccatttctaaatatgagattttagtctcttatctaattttatattgtattgc |
10107272 |
T |
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| Q |
310 |
ttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggta |
386 |
Q |
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| ||||||| |||||| ||||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
10107273 |
tggaaaaatggtgttggagattacttgttgattagggtgggttatgacataaagtcttagcagcaaaatatggggta |
10107349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 433 - 674
Target Start/End: Original strand, 10107349 - 10107603
Alignment:
| Q |
433 |
aagaatatttgtgatgttaaagagggagtaggtgtgcatgaggtaggttttggtttgaggttaattttgtgtgtcacgtaggtaatggtgaaagttcttc |
532 |
Q |
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||||| ||||||||||||||| |||||||||| |||| ||||| ||||| |||||| || |||||| |||||||||||||||||||||||||||| || |
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| T |
10107349 |
aagaacatttgtgatgttaaaaagggagtaggcgtgcctgaggcaggtt--ggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctc |
10107446 |
T |
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| Q |
533 |
tttttgaaacgatatttggttagaaggggtttcattatgtcttggat-ttagtcatttgtttgatttgtttgttgactctaatataattgttg------- |
624 |
Q |
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||||||||||||| |||| | ||||||| |||||||||| || || ||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
10107447 |
tttttgaaacgatccttggctggaagggggttcattatgtgttaaatattagttgtatgtttgatttgtttgttgactctagtataattgttgctgagac |
10107546 |
T |
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| Q |
625 |
-------ttggggtgggggattgaggacagaggttggagatggaggaggagactttt |
674 |
Q |
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| T |
10107547 |
aaggagattggggtggggggttgacgacagaggttggagatggaggaggagactttt |
10107603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 27246 - 27135
Alignment:
| Q |
294 |
tttaatattgtattgtttgaaaaatagtgttgtagattacatgttgattagggtgggttatgacacaaaatcttgacagcaaaatatggggtagagggtg |
393 |
Q |
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|||||||||||| |||| | ||||| | ||| | ||||||||||| | | |||| |||||| ||||||| |||| ||||||||||||| ||||||||| |
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| T |
27246 |
tttaatattgtactgttgggaaaatggatttggatattacatgttggtcatggtgcgttatggtacaaaattttgatagcaaaatatgggatagagggtg |
27147 |
T |
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| Q |
394 |
gtcgtattagag |
405 |
Q |
| |
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|||||||||||| |
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| T |
27146 |
gtcgtattagag |
27135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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