View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_31 (Length: 329)
Name: NF17083_low_31
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 132 - 313
Target Start/End: Complemental strand, 36644748 - 36644567
Alignment:
| Q |
132 |
ctactttatgtatttcgttttcataattacttcaagtcatttgaaaacgagcttacctaaaaccacctggttccttaatttttattgatcttgctgagta |
231 |
Q |
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| T |
36644748 |
ctactttatgtatttcgttttcataattacttcaagtcatttgaaaacgagcttacctaaaaccacctggttccttaatttttattgatcttgctgagta |
36644649 |
T |
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| Q |
232 |
aacttttgaccctcctgcatgtacattgtgtgcaaaatgagacactgaaaccaagaactagaaggaaagagaaagagcaatg |
313 |
Q |
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| T |
36644648 |
aacttttgaccctcctgcatgtacattttgtgcaaaatgagacactgaaaccaagaactagaaggaaagagaaagagcaatg |
36644567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 36644868 - 36644791
Alignment:
| Q |
12 |
ataggagaacgtatatcctgaaatgctatttatttatagaccagaccttcttttcttggataacttgtttcattttct |
89 |
Q |
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| T |
36644868 |
ataggagaacgtatatcctgaaatgctgtttatttatagaccagaccttcttttcttggataacttgtttcattttct |
36644791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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