View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_32 (Length: 319)
Name: NF17083_low_32
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 14982906 - 14983208
Alignment:
| Q |
12 |
aagaaagagcccgagtttctgttcaagcacgaacatgggaaactacattatccaggcattggacatttagggtttccaccacactttggagttactccta |
111 |
Q |
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| T |
14982906 |
aagaaagagcctgagtttctgttcaagcacgaacatgggaaactacattatccaggcattggacatttagggtttccaccacactttggagttactccta |
14983005 |
T |
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| Q |
112 |
ataatccatttattggtggcactggaggatcaggatcgggatcaggttcgagttcaggagctggagctggatcaggatcatcgggtcacagttacgttcc |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14983006 |
ataacccatttattggtggcactggaggatcaggatcgggatcaggttcgagttcaggagctggagctggatcaggatcatcgggtcacagttacgttcc |
14983105 |
T |
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| Q |
212 |
tggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggtagagctgcagaaacagttaatccatga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14983106 |
tggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggtagagctgcagaaacagttaatccatga |
14983205 |
T |
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| Q |
312 |
att |
314 |
Q |
| |
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||| |
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| T |
14983206 |
att |
14983208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 14966822 - 14967094
Alignment:
| Q |
12 |
aagaaagagcccgagtttctgttcaagcacgaacatgggaaactacattatccaggcattggacatttagggtttccaccacactttggagttactccta |
111 |
Q |
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||||||||||| ||||| |||||||||| || ||||| ||||| ||||| || |||||||||||||| || |||||||| | || || ||||||||| |
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| T |
14966822 |
aagaaagagccgcagtttttgttcaagcatgatcatggtaaactgcattaccctggcattggacattttggatttccaccgaaattcgggcttactccta |
14966921 |
T |
|
| Q |
112 |
ataatccatttattggtggcactggaggatcaggatcgggatcaggttcgagttcaggagctggagctggatcaggatcatcgggtcacagttacgttcc |
211 |
Q |
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|||| || |||||||||||||||||||||| |||||| || | ||| || | || ||||| ||| | ||||||| |||||| || || ||||| ||||| |
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| T |
14966922 |
ataacccgtttattggtggcactggaggattaggatcaggttaaggatcaggatctggagcaggatcaggatcagcatcatcaggacatagttatgttcc |
14967021 |
T |
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| Q |
212 |
tggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtggaggtggt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
14967022 |
cggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcccagcagtggtggtggcggtggt |
14967094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 38268088 - 38268014
Alignment:
| Q |
202 |
gttacgttcctggtggcgatgacacatttgttccaaaccctggctttgaggttccaaatcctggcagtggtggtg |
276 |
Q |
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|||| ||||| ||||| |||||||| ||| | || || ||||| |||||||||||| ||||||||||||||||| |
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| T |
38268088 |
gttatgttccaggtggtgatgacacctttatccctaatcctggtgttgaggttccaattcctggcagtggtggtg |
38268014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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