View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17083_low_36 (Length: 286)

Name: NF17083_low_36
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17083_low_36
NF17083_low_36
[»] chr1 (15 HSPs)
chr1 (2-286)||(6213031-6213315)
chr1 (144-286)||(4441248-4441390)
chr1 (144-248)||(4362128-4362232)
chr1 (67-239)||(45377741-45377913)
chr1 (78-212)||(17391665-17391799)
chr1 (76-201)||(2758990-2759115)
chr1 (144-225)||(7287295-7287376)
chr1 (69-187)||(65114-65232)
chr1 (77-187)||(51370203-51370313)
chr1 (98-201)||(3839360-3839463)
chr1 (69-156)||(35718442-35718530)
chr1 (105-199)||(28397372-28397466)
chr1 (144-201)||(30562247-30562304)
chr1 (67-127)||(35879675-35879735)
chr1 (144-200)||(47295793-47295849)
[»] chr4 (14 HSPs)
chr4 (69-248)||(11432453-11432632)
chr4 (83-199)||(36105735-36105851)
chr4 (69-248)||(22319906-22320085)
chr4 (69-196)||(32526363-32526490)
chr4 (75-228)||(43024702-43024855)
chr4 (144-248)||(6893097-6893201)
chr4 (76-223)||(4576691-4576838)
chr4 (76-199)||(34510363-34510486)
chr4 (146-233)||(40630020-40630106)
chr4 (70-199)||(52973673-52973802)
chr4 (144-230)||(55957685-55957771)
chr4 (77-130)||(24014554-24014607)
chr4 (144-197)||(52264301-52264354)
chr4 (165-237)||(10183600-10183672)
[»] chr3 (5 HSPs)
chr3 (77-204)||(31132953-31133080)
chr3 (77-239)||(29697423-29697585)
chr3 (144-239)||(9503763-9503858)
chr3 (76-185)||(21523821-21523930)
chr3 (69-225)||(43946675-43946833)
[»] chr6 (3 HSPs)
chr6 (76-248)||(10667493-10667665)
chr6 (75-197)||(33614511-33614633)
chr6 (93-239)||(5331239-5331385)
[»] chr5 (18 HSPs)
chr5 (69-269)||(36439824-36440024)
chr5 (144-257)||(3010198-3010311)
chr5 (105-225)||(8570278-8570398)
chr5 (144-248)||(40417432-40417536)
chr5 (69-199)||(15577809-15577940)
chr5 (75-197)||(22859676-22859798)
chr5 (144-248)||(39981549-39981653)
chr5 (79-197)||(8689087-8689205)
chr5 (155-232)||(11191961-11192038)
chr5 (144-217)||(11422706-11422779)
chr5 (104-187)||(6391492-6391575)
chr5 (167-233)||(41387041-41387107)
chr5 (104-201)||(16844558-16844655)
chr5 (180-229)||(29724396-29724445)
chr5 (79-248)||(35319228-35319397)
chr5 (165-254)||(40514691-40514779)
chr5 (147-199)||(2823583-2823635)
chr5 (75-199)||(10918294-10918418)
[»] chr7 (20 HSPs)
chr7 (84-232)||(44073490-44073638)
chr7 (144-248)||(32555821-32555925)
chr7 (78-196)||(22166029-22166149)
chr7 (78-196)||(22224736-22224856)
chr7 (116-248)||(5034023-5034155)
chr7 (144-255)||(9479210-9479321)
chr7 (69-132)||(41170490-41170553)
chr7 (148-242)||(32684166-32684260)
chr7 (76-248)||(25685224-25685396)
chr7 (116-223)||(40727194-40727301)
chr7 (69-130)||(18793691-18793752)
chr7 (77-130)||(28249012-28249065)
chr7 (144-248)||(9271079-9271183)
chr7 (165-248)||(18793596-18793679)
chr7 (118-269)||(37155631-37155782)
chr7 (78-199)||(38566600-38566718)
chr7 (172-255)||(10577480-10577565)
chr7 (107-225)||(39727191-39727309)
chr7 (152-201)||(25072663-25072712)
chr7 (144-201)||(32420331-32420388)
[»] chr8 (15 HSPs)
chr8 (76-197)||(31587953-31588074)
chr8 (69-217)||(1222330-1222478)
chr8 (76-230)||(40691114-40691266)
chr8 (165-248)||(44652618-44652701)
chr8 (151-253)||(12942117-12942219)
chr8 (104-225)||(10811846-10811967)
chr8 (116-248)||(21019685-21019817)
chr8 (144-255)||(35223586-35223697)
chr8 (166-248)||(15664903-15664985)
chr8 (14-56)||(31595117-31595159)
chr8 (144-233)||(2374227-2374316)
chr8 (76-201)||(31955704-31955829)
chr8 (151-200)||(35458763-35458812)
chr8 (76-204)||(9617273-9617401)
chr8 (144-248)||(39139275-39139379)
[»] scaffold0092 (1 HSPs)
scaffold0092 (69-197)||(37209-37336)
[»] chr2 (6 HSPs)
chr2 (144-249)||(5880165-5880270)
chr2 (83-216)||(36758088-36758221)
chr2 (75-187)||(5712552-5712664)
chr2 (144-248)||(9716353-9716457)
chr2 (77-199)||(12848772-12848895)
chr2 (211-264)||(25955385-25955438)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 6213031 - 6213315
Alignment:
Q  2 gaaactagggttatgttgttgtgaggtattctctcacaacaaatagcaatttcctataatatttattaaattgtctaaaaattcatgttaaatataaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6213031 gaaactagggttatgttgttgtgaggtattctctcacaacaaatagcaattttctataatatttattaaattctctaaaaattcatgttaaatataaaaa 6213130  T
Q  102 atgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 201  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6213131 atgagtttattcttattgatctattagttcgtaagtcgattgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 6213230  T
Q  202 ttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaatataagcttgtaacagaccgcggtccaagcttaggctt 286  Q
    ||| |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6213231 ttaacagaccatatcaagctttcaaaaggtcagactcagacctaaaatataaacttgtgacagaccgcggtccaagcttaggctt 6213315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 4441248 - 4441390
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||||||| ||| |||||| ||||||||| || ||| | ||||||||||| || |||||| |||||  |||||| |||| ||||||||  ||    
T  4441248 aaacttagatcacatttcatatttaaagatgttcataagatataggcttttaaacaggctagcagaccgtatcagactttcagaaggccaaactcaggcc 4441347  T
Q  244 taaaatataagcttgtaacagaccgcggtccaagcttaggctt 286  Q
    |||||  || |||| | ||||  ||| | ||||||||||||||    
T  4441348 taaaaggtaggcttatgacaggtcgcaggccaagcttaggctt 4441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 4362232 - 4362128
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    ||||||| |||||||| | | ||||||||||||||||||||||| | ||||||||||| ||  || || ||||| ||||||| ||||||| |||||  ||    
T  4362232 aaacttaaatcacattgcttatttaaaaatgttcatatgaaataggcttttaaacaggctagtaggccgtatcaggctttcagaaggtcagactcaagcc 4362133  T
Q  244 taaaa 248  Q
    |||||    
T  4362132 taaaa 4362128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 45377913 - 45377741
Alignment:
Q  67 ttaaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttt 166  Q
    |||||||  ||||||| ||||||| | ||| ||||  ||||||| ||| |||||| ||||||||||  | ||  || | ||||||||||||||     ||    
T  45377913 ttaaattccctaaaaactcatgttgattatcaaaagagagtttaatctaattgatatattagttcgctagtctatttacacttagatcacattgttgatt 45377814  T
Q  167 taaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactca 239  Q
    |||| || ||||||||||||| | ||||||||||| || |||||| ||||| ||||||| |||| ||||||||    
T  45377813 taaagatattcatatgaaataggcttttaaacaggctagcagaccgtatcaggctttcagaaggccaaactca 45377741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 17391665 - 17391799
Alignment:
Q  78 aaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttc 177  Q
    |||| |||||||| ||||| |||| |||||||| | ||||| || ||||||||||| | ||  || ||| | | |||||||||| | |||||| ||||||    
T  17391665 aaaatttcatgttgaatatcaaaagtgagtttaattttattcatatattagttcgttagtccatttaaattaatatcacattacttatttaaagatgttc 17391764  T
Q  178 atatgaaataagtttttaaacaggttaccagacca 212  Q
    |||| |||||  ||||||||||| ||| |||||||    
T  17391765 atataaaatagttttttaaacagtttagcagacca 17391799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 2759115 - 2758990
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||| ||||| ||| ||| ||||  ||||||| ||| |||||| ||||||||||  | ||  || ||||||||||||||||   | |||||| ||||    
T  2759115 ctaaaaactcatggtaattatcaaaagagagtttaatctaattgatatattagttcgctaatcaatttaaacttagatcacattgtttatttaaatatgt 2759016  T
Q  176 tcatatgaaataagtttttaaacagg 201  Q
    |||||||||||| | |||||||||||    
T  2759015 tcatatgaaataggcttttaaacagg 2758990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 7287295 - 7287376
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttca 225  Q
    |||||||||||||||| | | |||||| ||||||||| || ||| ||||||||||||| || |||||| ||||| |||||||    
T  7287295 aaacttagatcacattgcttatttaaagatgttcataagatatatgtttttaaacaggctagcagaccgtatcaggctttca 7287376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 65232 - 65114
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| ||||||| ||||| |||||||||||||||||||||| | ||| |||||||||  ||||| | |   || |||||||||| ||||||  | ||||    
T  65232 aaattctctaaaacttcattttaaatataaaaaatgagtttaattttaatgatctattgattcgttactatatttaaacttagattacattatctattta 65133  T
Q  169 aaaatgttcatatgaaata 187  Q
     | || |||||||||||||    
T  65132 tagatattcatatgaaata 65114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 51370313 - 51370203
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgtt 176  Q
    |||||||||||||| | ||| ||||  ||||||| ||| |||||| |||| |||||| | ||   | |||||||||||||||| | | |||||| |||||    
T  51370313 taaaaattcatgttgattatcaaaagagagtttaatctaattgatatatttgttcgttagtctagttaaacttagatcacattgcttatttaaatatgtt 51370214  T
Q  177 catatgaaata 187  Q
    |||||||||||    
T  51370213 catatgaaata 51370203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 3839360 - 3839463
Alignment:
Q  98 aaaaatgagtttattcttattgatctattagttcgtaa-ttcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaa 196  Q
    |||| |||||||| ||| ||||| |||||||||||| | || |||| |||||||||||||||| | | |||||| ||||||||| || ||| | ||||||    
T  3839360 aaaagtgagtttaatctaattgaactattagttcgttagtttgttt-aaacttagatcacattgcttatttaaagatgttcataagatataggcttttaa 3839458  T
Q  197 acagg 201  Q
    |||||    
T  3839459 acagg 3839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 35718530 - 35718442
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataa-aaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcac 156  Q
    ||||| ||||||||||| |||||||||||| |||| ||||||| | | | |||| ||||||||| | | ||| ||||||||||||||||    
T  35718530 aaattctctaaaaattcttgttaaatataaaaaaacgagtttaatttcaatgatatattagttcattagtcgattgaaacttagatcac 35718442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 28397466 - 28397372
Alignment:
Q  105 agtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaaca 199  Q
    |||||| |||||||||||||| ||||||  | ||  || ||||||| |  ||||||| | |||||| || || ||||||||||||||||||||||    
T  28397466 agtttaatcttattgatctataagttcgctaatctatttaaacttatactacattacttatttaaagatttttatatgaaataagtttttaaaca 28397372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 30562304 - 30562247
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 201  Q
    ||||||||||||||||   | |||||| |||||||||||||||| | |||||||||||    
T  30562304 aaacttagatcacattgattatttaaagatgttcatatgaaataggcttttaaacagg 30562247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 35879735 - 35879675
Alignment:
Q  67 ttaaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctatta 127  Q
    ||||||| |||||||  ||||||||||||| ||||| ||||||| ||| |||| |||||||    
T  35879735 ttaaattctctaaaatgtcatgttaaatatcaaaaaggagtttaatctcattgctctatta 35879675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 47295793 - 47295849
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacag 200  Q
    |||||||||||||||| | | |||||| ||||||||||||||||   ||||||||||    
T  47295793 aaacttagatcacattgcttatttaaagatgttcatatgaaatagacttttaaacag 47295849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 11432453 - 11432632
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| |||||||||||||||| | ||| ||||  ||||||| | | |||||| ||||||||||  | ||  || ||||||||||||||||||   ||||    
T  11432453 aaattctctaaaaattcatgttgattatcaaaagagagtttaatttaattgatatattagttcgctaatctatttaaacttagatcacattactgattta 11432552  T
Q  169 aaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    || || || |||||||||| | ||||||||||| || |||||||||||||||||| ||||||||| |||||  |||||||    
T  11432553 aagatatttatatgaaataggcttttaaacaggctaacagaccatatcaagcttttaaaaggtcagactcaggcctaaaa 11432632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 36105851 - 36105735
Alignment:
Q  83 ttcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatg 182  Q
    ||||||| |||||| ||||  ||||||| ||| |||||| ||||||||||| | ||  || ||||||  ||||||||| || ||||||||||||||||||    
T  36105851 ttcatgtaaaatatcaaaagagagtttaatctcattgatatattagttcgttagtctatttaaacttgaatcacattaaatatttaaaaatgttcatatg 36105752  T
Q  183 aaataagtttttaaaca 199  Q
    ||||| | |||||||||    
T  36105751 aaataggcttttaaaca 36105735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 22320085 - 22319906
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| |||||||||||||||| | ||| ||||| ||||||| ||  |||||| |||||||| |  | ||  || ||||||| ||||| ||   | ||||    
T  22320085 aaattttctaaaaattcatgttgattatcaaaaaagagtttaatcaaattgatatattagtttgctagtctatttaaacttatatcacgttgtttattta 22319986  T
Q  169 aaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    || || ||||||||||||| | |||||||||||||| ||| || ||||| ||||||| ||||||| |||||  |||||||    
T  22319985 aacatattcatatgaaatatgcttttaaacaggttagcaggccgtatcaggctttcagaaggtcagactcaggcctaaaa 22319906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 32526490 - 32526363
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| |||||||||||||||||||||| ||||  ||||||| |||||||||| |||||||| |  | ||  || ||||||||||| | |||| | ||||    
T  32526490 aaattctctaaaaattcatgttaaatatcaaaagcgagtttaatcttattgatttattagtttgctaatctatttaaacttagatcgcgttacttattta 32526391  T
Q  169 aaaatgttcatatgaaataagtttttaa 196  Q
    ||  |||||||||||||||  |||||||    
T  32526390 aatttgttcatatgaaatatatttttaa 32526363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 43024702 - 43024855
Alignment:
Q  75 tctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatg 174  Q
    ||||||| |||||||||||||| ||||   |||||| ||| ||| ||||||||||| | || ||  || |||||||||||||||||  | |||||| |      
T  43024702 tctaaaagttcatgttaaatattaaaacaaagtttaatctcattaatctattagtttggaagtctatttaaacttagatcacattatttatttaaagaaa 43024801  T
Q  175 ttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaa 228  Q
    ||||||||||| |   ||||||| |||||| |||| |||||||| |||||||||    
T  43024802 ttcatatgaaacatacttttaaataggttaacagatcatatcaaactttcaaaa 43024855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 6893097 - 6893201
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    ||||| |||||||||| | | ||||||||||||||||||||||| | ||||||||| | || |||||| ||||| ||||||| |||| || | |||| ||    
T  6893097 aaactcagatcacattgcttatttaaaaatgttcatatgaaataggcttttaaacatgctagcagaccgtatcaggctttcagaaggccagattcatgcc 6893196  T
Q  244 taaaa 248  Q
    |||||    
T  6893197 taaaa 6893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 4576691 - 4576838
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||| ||||||| | ||| ||||  ||||| | ||| |||||| ||||||||||| | ||  || |||||||||||||||| | | |||||| || |    
T  4576691 ctaaaaactcatgttgattatcaaaagggagttgaatctaattgatatattagttcgttagtctatttaaacttagatcacattgcttatttaaagattt 4576790  T
Q  176 tcatatgaaataagtttttaaacaggttaccagaccatatcaagcttt 223  Q
    |||||||||| | | ||||||||||| || ||  || |||||||||||    
T  4576791 tcatatgaaacaggcttttaaacaggctagcaagccgtatcaagcttt 4576838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 34510486 - 34510363
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||| ||||||| | ||| ||||  ||||||| ||| |||||| ||||||||||  | ||  || |||||||||| ||||| | | |||||| ||||    
T  34510486 ctaaaaactcatgttgattatcaaaagagagtttaatctaattgatatattagttcgctagtctatttaaacttagattacattgcttatttaaagatgt 34510387  T
Q  176 tcatatgaaataagtttttaaaca 199  Q
    |||||||||||| | |||||||||    
T  34510386 tcatatgaaataggcttttaaaca 34510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 40630020 - 40630106
Alignment:
Q  146 acttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtca 233  Q
    |||| ||||||||||| | ||||||| ||||||||||||||| | ||||||| ||| || ||  || |||||||||||||||||||||    
T  40630020 actttgatcacattacttctttaaaa-tgttcatatgaaataggcttttaaaaaggctagcaagccgtatcaagctttcaaaaggtca 40630106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 52973802 - 52973673
Alignment:
Q  70 aattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaa 169  Q
    |||| |||||| ||||||||||| ||| ||||   | |||| ||  |||||||||||||||||  | ||  ||  ||||||||||||||||| | |||||    
T  52973802 aattctctaaacattcatgttaattatcaaaaggaaatttaatcacattgatctattagttcgctagtctattttaacttagatcacattacttatttaa 52973703  T
Q  170 aaatgttcatatgaaataagtttttaaaca 199  Q
    | ||||||| || ||||| |||||||||||    
T  52973702 agatgttcaaataaaataggtttttaaaca 52973673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 55957685 - 55957771
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaagg 230  Q
    ||||||||||||||||   | |||||| ||||||||| || ||| | ||||||||||| || |||  ||||||| ||||||||||||    
T  55957685 aaacttagatcacattggttatttaaagatgttcataagatataggcttttaaacaggctagcaggtcatatcaggctttcaaaagg 55957771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 24014607 - 24014554
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagtt 130  Q
    ||||| |||||||||||||| |||| | |||||| || ||||||||||||||||    
T  24014607 taaaatttcatgttaaatatcaaaattaagtttaatcatattgatctattagtt 24014554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 52264354 - 52264301
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaa 197  Q
    ||||||| |||||||||| | || ||| |||||||||||||||| |||||||||    
T  52264354 aaacttatatcacattacttattcaaagatgttcatatgaaatatgtttttaaa 52264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 10183672 - 10183600
Alignment:
Q  165 tttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaact 237  Q
    |||||||||||| ||||||||||  |||||||||||| || ||| || ||||| | ||||| |||| ||||||    
T  10183672 tttaaaaatgtttatatgaaatagatttttaaacaggctagcaggccgtatcaggttttcacaaggccaaact 10183600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 31133080 - 31132953
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgtt 176  Q
    ||||||||||||||||||| |||||  ||||||| ||| ||||||||||||||| |  | |   || |||||||||||||||||| | |||||| |||||    
T  31133080 taaaaattcatgttaaatacaaaaagagagtttaatctcattgatctattagtttgatagtatatttaaacttagatcacattacttatttaaagatgtt 31132981  T
Q  177 catatgaaataagtttttaaacaggtta 204  Q
    ||||||||||||| ||||||||||||||    
T  31132980 catatgaaataagcttttaaacaggtta 31132953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 29697585 - 29697423
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgtt 176  Q
    |||||| ||||||| | ||| ||||  ||||||| ||| ||| || ||||||||||| | ||  || ||||||||||| |||| | | |||||| |||||    
T  29697585 taaaaactcatgttgattatcaaaagagagtttaatctaattaatatattagttcgttagtctatttaaacttagatcgcattgcttatttaaagatgtt 29697486  T
Q  177 catatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactca 239  Q
    ||||||||||| || |||||||| | |  |||||| |||||  |||||||||||||| |||||    
T  29697485 catatgaaataggtctttaaacatgcttgcagaccgtatcagactttcaaaaggtcagactca 29697423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 9503858 - 9503763
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactca 239  Q
    |||||||||||||||| | | |||||| ||||||||| || ||| | ||||||||||| || |||  |||||||  |||||||||||||| |||||    
T  9503858 aaacttagatcacattgcttatttaaagatgttcataagatataggcttttaaacaggctagcaggtcatatcagactttcaaaaggtcagactca 9503763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 21523821 - 21523930
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||||||||||| | ||| ||||  ||| ||| ||| |||||| ||||||||||  | ||  || |||||||||||||||| | | |||||| ||||    
T  21523821 ctaaaaattcatgttgattatcaaaagagagattaatctaattgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgt 21523920  T
Q  176 tcatatgaaa 185  Q
    ||||||||||    
T  21523921 tcatatgaaa 21523930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 43946675 - 43946833
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagat--cacattacatttt 166  Q
    ||||| ||||||||||||| |||||| | ||||  ||||||| | |||||||| |||||||| || | ||  || ||||||| ||  |||||||| | ||    
T  43946675 aaattctctaaaaattcatattaaatgtcaaaatggagtttaatgttattgatttattagtttgtcagtctatttaaacttaaatcacacattacttatt 43946774  T
Q  167 taaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttca 225  Q
    |||| || | ||||||||||||  |||| |||| |||| |||| || ||||| ||||||    
T  43946775 taaagatatacatatgaaataaacttttcaacaagttaacagatcacatcaaactttca 43946833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 10667665 - 10667493
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||||||||||| ||||| ||||  ||||||||||| |||||||||| |||| |  | ||  || |||||||||||||||||| | |  ||| ||||    
T  10667665 ctaaaaattcatgttgaatatcaaaagagagtttattctaattgatctatgagtttgctagtctatttaaacttagatcacattacttatacaaagatgt 10667566  T
Q  176 tcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    |||||||||||| | ||||||||||  || ||| || || || ||||||| |||| || ||||||||||||||    
T  10667565 tcatatgaaataggcttttaaacagactagcaggccgtagcaggctttcagaaggccagactcatacctaaaa 10667493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 33614633 - 33614511
Alignment:
Q  75 tctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatg 174  Q
    |||||||||||||||||||||| ||||  ||||| | ||| |||||| |||||||||||   ||  || ||||||| || |||||| || |||||| |||    
T  33614633 tctaaaaattcatgttaaatatcaaaagagagttcaatctcattgatatattagttcgttgatctatttaaacttatattacattatatatttaaatatg 33614534  T
Q  175 ttcatatgaaataagtttttaaa 197  Q
    || |||||||||| |||||||||    
T  33614533 tttatatgaaataggtttttaaa 33614511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 5331239 - 5331385
Alignment:
Q  93 atataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagttt 192  Q
    |||| ||||| || |||| ||| ||| | |||||||||||| | ||  || |||||||| ||||||| | | |||||| || |||||| || ||| ||||    
T  5331239 atattaaaaaagaatttaatctaattaaactattagttcgttagtccatttaaacttaggtcacattgcttatttaaagatattcataagatataggttt 5331338  T
Q  193 ttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactca 239  Q
    |||||||||||| ||| || ||||||||||||| |||| || |||||    
T  5331339 ttaaacaggttagcaggccgtatcaagctttcagaaggccagactca 5331385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 36440024 - 36439824
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| |||||||| ||||||| | ||| ||||  ||||||| |||  ||||| ||||||||||| | ||  || |||||||||| ||||| | | ||||    
T  36440024 aaattctctaaaaagtcatgttgattatcaaaagagagtttaatctatttgatatattagttcgttagtctatttaaacttagataacattgcttattta 36439925  T
Q  169 aaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaatataagcttgtaacagaccg 268  Q
    || ||||| |||||||||| | ||||||||||| || |||||| |||||| |||||| ||||| | ||||| ||||||||  |||| || | ||||||||    
T  36439924 aagatgtttatatgaaatatgcttttaaacaggctagcagaccgtatcaaactttcagaaggttagactcagacctaaaaagtaagtttatgacagaccg 36439825  T
Q  269 c 269  Q
    |    
T  36439824 c 36439824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 257
Target Start/End: Complemental strand, 3010311 - 3010198
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||| ||||| | |||||| |||||||| |  |||||  |||||||||  ||| ||| ||||||||  |||| |||||||||||||||||||    
T  3010311 aaacttagatcatattacttgtttaaagatgttcatgtataataacattttaaacacattagcaggccatatcagacttttaaaaggtcaaactcatacc 3010212  T
Q  244 taaaatataagctt 257  Q
    ||||| ||||||||    
T  3010211 taaaagataagctt 3010198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 8570278 - 8570398
Alignment:
Q  105 agtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggtta 204  Q
    |||||| ||| |||||| |||||||| || | ||  || ||| |||||||||||||| | |||||| | |||||||||||||| ||||||||||||| ||    
T  8570278 agtttaatctaattgatatattagtttgttagtctatttaaatttagatcacattacttatttaaatacgttcatatgaaataggtttttaaacaggcta 8570377  T
Q  205 ccagaccatatcaagctttca 225  Q
     |||| ||||| |||||||||    
T  8570378 gcagatcatattaagctttca 8570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 40417432 - 40417536
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||| ||||||||| | | |||||| |||||||||||||||| | |||||||||||||| |||||| ||||| ||||||| || |||| | |||| ||    
T  40417432 aaacttcgatcacattgcttatttaaagatgttcatatgaaataggcttttaaacaggttagcagaccgtatcaggctttcagaatgtcagattcatgcc 40417531  T
Q  244 taaaa 248  Q
    |||||    
T  40417532 taaaa 40417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 15577940 - 15577809
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatg-agtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttt 167  Q
    ||||| |||||||||||||||||||||||||||| | |||||| |||| ||||  ||||||||    |  |   | |||||||||||||||||| | |||    
T  15577940 aaattctctaaaaattcatgttaaatataaaaaaaggagtttaatcttgttgagttattagttaactagactaattaaacttagatcacattacctattt 15577841  T
Q  168 aaaaatgttcatatgaaataagtttttaaaca 199  Q
    |||||||||||||||||||| | |||||||||    
T  15577840 aaaaatgttcatatgaaatatgattttaaaca 15577809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 22859676 - 22859798
Alignment:
Q  75 tctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatg 174  Q
    ||||||| ||||| |||||||| ||||  ||||||| | | ||||||||||||| |||| | || ||| || ||| |||||| |||| | |||||| |||    
T  22859676 tctaaaacttcatattaaatatcaaaagagagtttaatatcattgatctattagctcgttagtctttttaaccttggatcaccttacttatttaaagatg 22859775  T
Q  175 ttcatatgaaataagtttttaaa 197  Q
    ||||||||||||| |||||||||    
T  22859776 ttcatatgaaataggtttttaaa 22859798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 39981653 - 39981549
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||| ||||||||| | | |||||| |||||||||||||||| | |||||||||||||| ||| || ||||| ||||||| || | || |||||| ||    
T  39981653 aaacttcgatcacattgcttatttaaatatgttcatatgaaataggcttttaaacaggttagcaggccgtatcaggctttcagaatgccagactcatgcc 39981554  T
Q  244 taaaa 248  Q
    |||||    
T  39981553 taaaa 39981549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 8689205 - 8689087
Alignment:
Q  79 aaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttca 178  Q
    |||||||||||||||||| ||||   |||||  ||||||| |||||||| || |  | ||  || ||||||| |||||||||||| |||||| |||||||    
T  8689205 aaaattcatgttaaatattaaaagaaagttttatcttattcatctattaatttgatagtctatttaaacttatatcacattacatatttaaagatgttca 8689106  T
Q  179 tatgaaataagtttttaaa 197  Q
    ||| ||||||  |||||||    
T  8689105 tataaaataaacttttaaa 8689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 11191961 - 11192038
Alignment:
Q  155 acattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtc 232  Q
    ||||||| | |||||  ||||| ||||||||| |||||||||||||||||  ||| ||||| ||| ||||||||||||    
T  11191961 acattacttatttaacgatgtttatatgaaatcagtttttaaacaggttagtagatcatatgaagttttcaaaaggtc 11192038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 11422706 - 11422779
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatca 217  Q
    |||||||||||||| | | | |||||||||||||||| |||||| |||||||| |||| || ||| ||||||||    
T  11422706 aaacttagatcacaatgcttatttaaaaatgttcataagaaatatgtttttaatcaggctagcaggccatatca 11422779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 6391492 - 6391575
Alignment:
Q  104 gagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaata 187  Q
    ||||||| ||| |||||| ||||||||||  | ||  || |||||||||||||||| | | |||||| ||||||||||||||||    
T  6391492 gagtttaatctaattgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcatatgaaata 6391575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 41387041 - 41387107
Alignment:
Q  167 taaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtca 233  Q
    |||| |||||||||||||||||| ||||||||||| |  ||  |||||||| ||||||| |||||||    
T  41387041 taaagatgttcatatgaaataagcttttaaacaggcttgcaagccatatcaggctttcacaaggtca 41387107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 16844558 - 16844655
Alignment:
Q  104 gagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 201  Q
    ||||||| ||| ||||| |||||||||||  | ||  || |||||||||||||||| | | |||||| ||||||||| || ||| | |||||||||||    
T  16844558 gagtttaatctaattgaactattagttcgctagtccatttaaacttagatcacatttcttatttaaagatgttcataagatatatgcttttaaacagg 16844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 29724445 - 29724396
Alignment:
Q  180 atgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaag 229  Q
    |||||||||  ||||||||| |||| ||||||||||||| ||||||||||    
T  29724445 atgaaataaacttttaaacaagttatcagaccatatcaaactttcaaaag 29724396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 35319397 - 35319228
Alignment:
Q  79 aaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttca 178  Q
    |||||||||||| | ||| ||||  || |||| ||| |||||| |||||||||   | ||  || |||||||||||||||| | | |||||| ||||| |    
T  35319397 aaaattcatgttgattatcaaaagagactttaatctaattgatatattagttccctagtctatttaaacttagatcacattgcttatttaaatatgttta 35319298  T
Q  179 tatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    | ||||  | | ||||||||||| || ||| || |||||  |||||||||||||| |||||  |||||||    
T  35319297 tctgaagcaggcttttaaacaggctagcaggccgtatcagactttcaaaaggtcagactcaggcctaaaa 35319228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 40514779 - 40514691
Alignment:
Q  165 tttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaatataag 254  Q
    |||||| |||||||||||||||  | ||||||||||  || ||||||||||||  |||||| |||||||  |||| ||||||||| ||||    
T  40514779 tttaaagatgttcatatgaaatg-gcttttaaacagactagcagaccatatcagactttcagaaggtcaggctcagacctaaaatgtaag 40514691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 2823583 - 2823635
Alignment:
Q  147 cttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaaca 199  Q
    |||| |||||||||| | ||||| ||||||||||||||||||  |||||||||    
T  2823583 cttatatcacattacttatttaataatgttcatatgaaataaacttttaaaca 2823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 10918418 - 10918294
Alignment:
Q  75 tctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatg 174  Q
    ||||||| || |||||||||||  |||  ||||||| | |||||||| |||||| || | | || ||| || |||  |||||||||  | |||||| |||    
T  10918418 tctaaaactttatgttaaatatcgaaagagagtttaatattattgatttattagctcattagtctttttaaccttgaatcacattatttatttaaatatg 10918319  T
Q  175 ttcatatgaaataagtttttaaaca 199  Q
    ||||||||||||||  |||||||||    
T  10918318 ttcatatgaaataaacttttaaaca 10918294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 44073490 - 44073638
Alignment:
Q  84 tcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatga 183  Q
    ||||||||||||| ||||  ||||||| ||  |||| ||||||||||||  ||||  || ||||| | |||| ||||| | ||||||||| |||||||||    
T  44073490 tcatgttaaatatcaaaagggagtttaatcgcattggtctattagttcgctattctattcaaactcatatcatattacttatttaaaaatattcatatga 44073589  T
Q  184 aataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtc 232  Q
    |||| ||||||||||||| || ||| ||| ||| ||||||||| |||||    
T  44073590 aatatgtttttaaacaggctagcaggccacatcgagctttcaagaggtc 44073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 32555821 - 32555925
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||||||| | | ||||||||||||||||| ||| | | ||||||||||| || |||||| ||||| ||||||| ||||||| |||||  ||    
T  32555821 aaacttagatcacattgcttatttaaaaatgttcatataaaacaggcttttaaacaggctagcagaccgtatcaggctttcagaaggtcagactcaagcc 32555920  T
Q  244 taaaa 248  Q
    |||||    
T  32555921 taaaa 32555925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 22166029 - 22166149
Alignment:
Q  78 aaaaattcatgttaaatataaaa--aatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    |||||||| ||||||||||||||  |||||||||| | | |||||||||||||||||| | | | || ||||||| |||||||||  | |||||| ||||    
T  22166029 aaaaattcttgttaaatataaaaaaaatgagtttaatttaattgatctattagttcgttagttgattaaaacttaaatcacattatttatttaaagatgt 22166128  T
Q  176 tcatatgaaataagtttttaa 196  Q
    | |||||||||| | ||||||    
T  22166129 ttatatgaaataggattttaa 22166149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 22224736 - 22224856
Alignment:
Q  78 aaaaattcatgttaaatataaaa--aatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    |||||||| ||||||||||||||  |||||||||| | | |||||||||||||||||| | | | || ||||||| |||||||||  | |||||| ||||    
T  22224736 aaaaattcttgttaaatataaaaaaaatgagtttaatttaattgatctattagttcgttagttgattaaaacttaaatcacattatttatttaaagatgt 22224835  T
Q  176 tcatatgaaataagtttttaa 196  Q
    | |||||||||| | ||||||    
T  22224836 ttatatgaaataggattttaa 22224856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 5034155 - 5034023
Alignment:
Q  116 attgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatat 215  Q
    |||||||||||||||||  | ||  || |||||| ||||||||| | | |||||| |||||||||||||||| | |||||||||||  | || ||| |||    
T  5034155 attgatctattagttcgctagtctatttaaactttgatcacattgcttatttaaatatgttcatatgaaataggcttttaaacaggcaagcataccgtat 5034056  T
Q  216 caagctttcaaaaggtcaaactcatacctaaaa 248  Q
    || ||||||| ||||||| |||||  |||||||    
T  5034055 caggctttcagaaggtcagactcaggcctaaaa 5034023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 9479321 - 9479210
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||| |||||| |||| | | |||||| ||||||||||||||||   ||||||||| | || |||||| ||| | ||||||||||||||| |||||| ||    
T  9479321 aaacatagatcgcattgcttatttaaatatgttcatatgaaatattcttttaaacatgctagcagaccgtataaggctttcaaaaggtcagactcatgcc 9479222  T
Q  244 taaaatataagc 255  Q
    |||||| |||||    
T  9479221 taaaatgtaagc 9479210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 41170490 - 41170553
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcg 132  Q
    ||||| |||||||||||||||||||||| ||||| ||||||| |||  ||||||||||||||||    
T  41170490 aaattctctaaaaattcatgttaaatatcaaaaaagagtttaatctcgttgatctattagttcg 41170553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 32684260 - 32684166
Alignment:
Q  148 ttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatac 242  Q
    |||||||||||||  | |||||| | | |||||||||||| | ||||||||||| || |||| ||||| || ||||||| |||||||||||||||    
T  32684260 ttagatcacattatttatttaaagacggtcatatgaaatatgcttttaaacaggatagcagatcatatgaaactttcaataggtcaaactcatac 32684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 25685396 - 25685224
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||||| ||||| | ||| ||||  ||||||| ||| |||||| ||||||||||  | ||  || |||||||||||| ||| | | |||||| || |    
T  25685396 ctaaaaatttatgttgattatcaaaagagagtttaatctaattgatatattagttcgctagtctatttaaacttagatcatattgcttatttaaatatat 25685297  T
Q  176 tcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    |||||||||||| | ||||||||||| ||  ||  | ||||||||||||| |||| || || || ||||||||    
T  25685296 tcatatgaaataggcttttaaacaggctagtaggtcgtatcaagctttcagaaggccagacccagacctaaaa 25685224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 40727194 - 40727301
Alignment:
Q  116 attgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatat 215  Q
    ||||| |||||||||||| | ||  || |||||||||||||||| | | |||||| |||||||||  | ||| | ||||||||| |||| |||||| |||    
T  40727194 attgaactattagttcgttagtccatttaaacttagatcacattgcttatttaaagatgttcataaaatataggcttttaaacatgttaacagaccgtat 40727293  T
Q  216 caagcttt 223  Q
    ||||||||    
T  40727294 caagcttt 40727301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 18793752 - 18793691
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagtt 130  Q
    ||||| |||||||||||||||||||||| ||||  ||||||| ||  |||||||||||||||    
T  18793752 aaattctctaaaaattcatgttaaatatcaaaagagagtttaatcgcattgatctattagtt 18793691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 28249012 - 28249065
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagtt 130  Q
    |||||| ||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  28249012 taaaaactcatgttaaatatcaaaaaagagtttaatctaattgatctattagtt 28249065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 9271183 - 9271079
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||| ||||||||||| | | |||||| |||||||||||||||| |  ||||||||||||| ||| || ||||| | ||||  ||||||| |||||  ||    
T  9271183 aaacctagatcacattgcttatttaaagatgttcatatgaaataggcctttaaacaggttagcaggccgtatcaggatttcggaaggtcagactcaagcc 9271084  T
Q  244 taaaa 248  Q
    |||||    
T  9271083 taaaa 9271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 18793679 - 18793596
Alignment:
Q  165 tttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    |||||| ||||||||||| |||||| ||||||| || ||| || ||||||||| ||||||| |||  ||| |||| ||||||||    
T  18793679 tttaaatatgttcatatgcaataagcttttaaatagattaacataccatatcaggctttcagaagaccaatctcaaacctaaaa 18793596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 269
Target Start/End: Original strand, 37155631 - 37155782
Alignment:
Q  118 tgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatca 217  Q
    ||||||||||| |||| | ||  || || ||| ||||| ||||| | |||||| |||||| ||||||||| | |||||||||||||| |||||   ||||    
T  37155631 tgatctattagctcgttagtctatttaaccttggatcatattacttatttaaagatgttcgtatgaaataggcttttaaacaggttagcagacttaatca 37155730  T
Q  218 agctttcaaaaggtcaaactcatacctaaaatataagcttgtaacagaccgc 269  Q
     ||||||| |||| || | ||| || ||||| |||| ||| | |||||||||    
T  37155731 ggctttcataaggccagattcagacataaaaaataaacttatgacagaccgc 37155782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 38566718 - 38566600
Alignment:
Q  78 aaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttc 177  Q
    ||||||||||||||| ||| ||||  ||||||| ||| ||||||||||||||| |  | ||  || ||| |||||||||| ||| | |||   |||||||    
T  38566718 aaaaattcatgttaagtatcaaaagagagtttaatctcattgatctattagttagacaatctatttaaatttagatcacaatacttattt---aatgttc 38566622  T
Q  178 atatgaaataagtttttaaaca 199  Q
    ||||||||||  ||||||||||    
T  38566621 atatgaaatagatttttaaaca 38566600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 10577565 - 10577480
Alignment:
Q  172 atgttcatatgaaa--taagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaatataagc 255  Q
    ||||||||||||||  ||| |||||||| |||||| ||   ||||||| | |||||||| |||||||||||| |||||| ||||||    
T  10577565 atgttcatatgaaacataaatttttaaataggttaacatgtcatatcaggttttcaaaatgtcaaactcatatctaaaaaataagc 10577480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 39727309 - 39727191
Alignment:
Q  107 tttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttacc 206  Q
    |||| ||| |||||| ||||||||||  | ||  || |||||||||| ||||| |   |||||| ||| |||||| ||||| | ||||||||||| || |    
T  39727309 tttaatctaattgatatattagttcgctagtctatttaaacttagataacattgctcatttaaatatgctcatataaaataggcttttaaacaggctagc 39727210  T
Q  207 agaccatatcaagctttca 225  Q
    ||||||||||| |||||||    
T  39727209 agaccatatcaggctttca 39727191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 25072712 - 25072663
Alignment:
Q  152 atcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 201  Q
    |||||||||| | |||||| |||||||||||||||| | |||||||||||    
T  25072712 atcacattacttatttaaagatgttcatatgaaataggattttaaacagg 25072663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 32420388 - 32420331
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacagg 201  Q
    |||||||||||||||| | | |||||||||||| |||||| ||| | |||||||||||    
T  32420388 aaacttagatcacattgcttatttaaaaatgtttatatgatataggcttttaaacagg 32420331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 31587953 - 31588074
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||||||||||| | ||| ||||  ||||||| ||||||| || ||||||||||  | ||  || |||||||||||||||| | | |||||| ||||    
T  31587953 ctaaaaattcatgttgattatcaaaagagagtttaatcttattaatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgt 31588052  T
Q  176 tcatatgaaataagtttttaaa 197  Q
    |||||||||| ||| |||||||    
T  31588053 tcatatgaaacaagcttttaaa 31588074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 1222330 - 1222478
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    ||||| |||||||| || || ||| ||| ||||  ||||||| ||| |||||| |||| |||||  | ||  || |||||||||||||||| | | ||||    
T  1222330 aaattctctaaaaactcgtgctaattatcaaaatagagtttaatctaattgatatattggttcgctagtctatttaaacttagatcacattgcttattta 1222429  T
Q  169 aaaatgttcatatgaaataagtttttaaacaggttaccagaccatatca 217  Q
    || || ||||||||||||| ||||||||||||| || |||||| |||||    
T  1222430 aagattttcatatgaaataggtttttaaacaggctagcagaccgtatca 1222478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 40691266 - 40691114
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    |||||| |||||||| | ||| ||||  ||||||| ||| |||||| ||||||||||  | ||  || |||||||||||||||| | | |||||| ||||    
T  40691266 ctaaaagttcatgttgattatcaaaa--gagtttaatctaattgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgt 40691169  T
Q  176 tcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaagg 230  Q
    |||||||||||| | ||||||||||| || ||| || ||| | ||||||| ||||    
T  40691168 tcatatgaaataggcttttaaacaggctagcaggccgtataaggctttcagaagg 40691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 44652618 - 44652701
Alignment:
Q  165 tttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    |||||| |||||||||||||||||| ||||||||||| || ||| || ||||| ||||||| |||| || ||||| ||||||||    
T  44652618 tttaaagatgttcatatgaaataagcttttaaacaggctagcaggccgtatcaggctttcagaaggccagactcagacctaaaa 44652701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 12942219 - 12942117
Alignment:
Q  151 gatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaata 250  Q
    ||||||||||| | | |||| |||||||||||||||||  ||||||| ||  || || | ||||||| || |||||||||||| ||||| |||||||| |    
T  12942219 gatcacattacttatgtaaatatgttcatatgaaataaacttttaaaaagagtaacaaatcatatcatgcgttcaaaaggtcagactcaaacctaaaaaa 12942120  T
Q  251 taa 253  Q
    |||    
T  12942119 taa 12942117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 10811967 - 10811846
Alignment:
Q  104 gagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggtt 203  Q
    ||||||| ||| ||||| | |||||||||| | ||  || |||||||||||||||| | | ||||||  |||||||| || ||| | ||||||||||| |    
T  10811967 gagtttaatctaattgaaccattagttcgttagtccatttaaacttagatcacattgcttatttaaagttgttcataagatataggcttttaaacaggct 10811868  T
Q  204 accagaccatatcaagctttca 225  Q
    | |||||| ||||| |||||||    
T  10811867 agcagaccgtatcaggctttca 10811846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 21019817 - 21019685
Alignment:
Q  116 attgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatat 215  Q
    |||||||||||||||||  | ||  || |||||||||||||||| | | |||||| ||||||||| || ||||  ||||||||| | || |||| |||||    
T  21019817 attgatctattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcataagatataaacttttaaacatgctagcagatcatat 21019718  T
Q  216 caagctttcaaaaggtcaaactcatacctaaaa 248  Q
    ||  |||||| ||||| | |||||  |||||||    
T  21019717 cagactttcagaaggttagactcaggcctaaaa 21019685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 35223697 - 35223586
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||| ||||| | |||||| | || ||||| ||||||  ||||||||| | || ||| ||||||||  |||| ||||||| ||||||| ||     
T  35223697 aaacttagatcatattacttatttaaagacgtccatataaaataatattttaaacacgctagcaggccatatcagacttttaaaaggtaaaactcagact 35223598  T
Q  244 taaaatataagc 255  Q
    ||||| ||||||    
T  35223597 taaaagataagc 35223586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 15664985 - 15664903
Alignment:
Q  166 ttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacctaaaa 248  Q
    ||||| |||||||| | ||||||||||||| | | ||||  ||| |||||||| |||||||||  ||||||||| ||||||||    
T  15664985 ttaaatatgttcatttaaaataagtttttatagatgttaagagatcatatcaaactttcaaaatatcaaactcaaacctaaaa 15664903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 31595159 - 31595117
Alignment:
Q  14 atgttgttgtgaggtattctctcacaacaaatagcaatttcct 56  Q
    ||||||| ||||||||||||||| | |||||||||||||||||    
T  31595159 atgttgtcgtgaggtattctctcgcgacaaatagcaatttcct 31595117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 2374316 - 2374227
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtca 233  Q
    |||||||||||||||| | | |||||| |||||| || || ||||| ||||||||| ||||  ||  | ||||||||||||| |||||||    
T  2374316 aaacttagatcacattgcttatttaaatatgttcgtaagatataagcttttaaacaagttagaaggtcgtatcaagctttcataaggtca 2374227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 31955704 - 31955829
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||| ||||||||| |||  |||  ||||||| ||| || ||| ||||||||||| | ||  || ||||||||||| |||| | | |||||||||||    
T  31955704 ctaaaaactcatgttaattatcgaaagagagtttaatctaatcgatatattagttcgttagtctatttaaacttagatcgcattgcttatttaaaaatgt 31955803  T
Q  176 tcatatgaaataagtttttaaacagg 201  Q
    | ||| || ||| | |||||||||||    
T  31955804 taatacgatatatgcttttaaacagg 31955829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 35458812 - 35458763
Alignment:
Q  151 gatcacattacatttttaaaaatgttcatatgaaataagtttttaaacag 200  Q
    ||||||||||| | |||||||| |||||||||||||| | ||||||||||    
T  35458812 gatcacattacttatttaaaaacgttcatatgaaatatgcttttaaacag 35458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 9617401 - 9617273
Alignment:
Q  76 ctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgt 175  Q
    ||||||| ||||||| | ||| ||||  ||||||| | | |||||| ||||||||||| | ||  ||  || |||||| ||||| | | |||||| ||||    
T  9617401 ctaaaaactcatgttgattatcaaaagagagtttaatttaattgatatattagttcgttaatctatttgaatttagattacattgcttatttaaatatgt 9617302  T
Q  176 tcatatgaaataagtttttaaacaggtta 204  Q
    ||||||||||||   ||||||||||||||    
T  9617301 tcatatgaaatagacttttaaacaggtta 9617273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 39139379 - 39139275
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||||||||| | ||||||  ||||||||| ||| | | || |||||||  || |||| | |||||  |||||| |||| |||||||| |||    
T  39139379 aaacttagatcacattacttatttaaaggtgttcatataaaacaggcttgtaaacagactagcagatcgtatcagactttcagaaggccaaactcagacc 39139280  T
Q  244 taaaa 248  Q
    |||||    
T  39139279 taaaa 39139275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 37336 - 37209
Alignment:
Q  69 aaattgtctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacattttta 168  Q
    |||||| |||||||||||||||||| || ||||| || |||| | |||||||||||||| ||||| | ||  || ||| ||| | |||| ||||| ||||    
T  37336 aaattgcctaaaaattcatgttaaacattaaaaaggactttaatattattgatctattatttcgttaatcaatttaaatttaaaccaca-tacatgttta 37238  T
Q  169 aaaatgttcatatgaaataagtttttaaa 197  Q
    |||||||| | |||||||||| |||||||    
T  37237 aaaatgttaacatgaaataagattttaaa 37209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 5880270 - 5880165
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||||||| | | |||||| ||||||||| || ||||| ||||||||||  || ||| | |||||||||||||| |||| || |||||  ||    
T  5880270 aaacttagatcacattgcttatttaaagatgttcataagatataagcttttaaacagtctagcaggctatatcaagctttcagaaggccagactcaagcc 5880171  T
Q  244 taaaat 249  Q
    ||||||    
T  5880170 taaaat 5880165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 36758221 - 36758088
Alignment:
Q  83 ttcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgttcatatg 182  Q
    |||||||||||||| ||||  ||||||| | | ||||||||||||||||||   ||  |  |  ||| |||||| |||| | |||||| ||||||||||     
T  36758221 ttcatgttaaatatcaaaagagagtttaatatcattgatctattagttcgttcgtctgtatactctttgatcacgttacttatttaaagatgttcatata 36758122  T
Q  183 aaataagtttttaaacaggttaccagaccatatc 216  Q
    |||||  |||||||||||| || |||||||||||    
T  36758121 aaatagatttttaaacaggctagcagaccatatc 36758088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 5712552 - 5712664
Alignment:
Q  75 tctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatg 174  Q
    ||||||| |||||||||||||| ||||  ||||||| | | ||||||||||||  | |  | ||  || || ||||||||||||||| | |||||| |||    
T  5712552 tctaaaacttcatgttaaatatcaaaagagagtttaatatcattgatctattaacttgctagtctatttaaccttagatcacattacttatttaaatatg 5712651  T
Q  175 ttcatatgaaata 187  Q
    |||||||||||||    
T  5712652 ttcatatgaaata 5712664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 9716353 - 9716457
Alignment:
Q  144 aaacttagatcacattacatttttaaaaatgttcatatgaaataagtttttaaacaggttaccagaccatatcaagctttcaaaaggtcaaactcatacc 243  Q
    |||||||||||||||| | | |||||| || |||||| || ||| | ||||||||||| || ||| || |||||  |||||| |||||||||||||  ||    
T  9716353 aaacttagatcacattgcttatttaaagatattcataagatataggcttttaaacaggctagcaggccgtatcagactttcagaaggtcaaactcaggcc 9716452  T
Q  244 taaaa 248  Q
    |||||    
T  9716453 taaaa 9716457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 12848772 - 12848895
Alignment:
Q  77 taaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaattcgtttgaaacttagatcacattacatttttaaaaatgtt 176  Q
    |||||| | ||||||||||||  |||||||| || ||| |||  |||||||| |||| | ||| ||||||| || |||| ||||  | |||||| |||||    
T  12848772 taaaaaataatgttaaatatatcaaatgagtataatctcattagtctattagctcgttaatcggttgaaacataaatcatattatctatttaaagatgtt 12848871  T
Q  177 catatgaaataag-tttttaaaca 199  Q
     |||||||||||| ||||||||||    
T  12848872 gatatgaaataagctttttaaaca 12848895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 25955385 - 25955438
Alignment:
Q  211 catatcaagctttcaaaaggtcaaactcatacctaaaatataagcttgtaacag 264  Q
    ||||||| |||||||||||  ||||||||||| |||| ||||||||| ||||||    
T  25955385 catatcatgctttcaaaagaccaaactcatacataaagtataagcttataacag 25955438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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