View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_46 (Length: 250)
Name: NF17083_low_46
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 52125612 - 52125843
Alignment:
| Q |
1 |
catgtaccatgagatgtgtatttattaggaaagtgagaggagtaatattactaaactatcaatcatattacgacgaagtacatatgtttctctaactaaa |
100 |
Q |
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| T |
52125612 |
catgtaccatgagatgtgtatatactaggaaagtgagaggagtaatattactaaactatcattcatattacgacgaagtgcatatatttctctaagtaaa |
52125711 |
T |
|
| Q |
101 |
attcatattatcatcaattctcgcctgcacagaaaatatttggctctgagaacttaagtcaccaaagagtgaggattggcaaaaacttttcaagcttgct |
200 |
Q |
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| T |
52125712 |
attcatattattaccaattctcacctccgcataaaatatttgattttgagaac-taagtcaccaaagagtgaggattggtaataacttttcaagcttgct |
52125810 |
T |
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| Q |
201 |
tgactaacatagatagattaaaaataaaatatc |
233 |
Q |
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| T |
52125811 |
taactaacatagatagattaaaaataaactatc |
52125843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 52125835 - 52126016
Alignment:
| Q |
52 |
taaactatcaatcatattacgacgaagtacatatgtttctctaactaaaattcatattatcatcaattctcgcctgcacagaaaatatttggctctgaga |
151 |
Q |
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| T |
52125835 |
taaactatcagtcatattacgaccaagtgcatacgtttctctaactaaaattcatattatcaccaattctcgcctgcgcagaaaatatttggctttgaga |
52125934 |
T |
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| Q |
152 |
acttaagtcaccaaagagtgaggattggcaaaaacttttcaagcttgcttgactaacatagatagattaaaaataaaatatc |
233 |
Q |
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| T |
52125935 |
acttaagtcaccaaagagcgaggattggcaaaaacttttcaagcttgcttgactaacatagatagattaaaaataaactatc |
52126016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 52126008 - 52126189
Alignment:
| Q |
52 |
taaactatcaatcatattacgacgaagtacatatgtttctctaactaaaattcatattatcatcaattctcgcctgcacagaaaatatttggctctgaga |
151 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||| ||||| |
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| T |
52126008 |
taaactatcagtcatattacgacgaagtgcatatgtttctctaactaaaattcatattattaccaattctcgcgtgcgcagaaaatatttggctttgaga |
52126107 |
T |
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| Q |
152 |
acttaagtcaccaaagagtgaggattggcaaaaacttttcaagcttgcttgactaacatagatagattaaaaataaaatatc |
233 |
Q |
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| T |
52126108 |
acttaagtcaccaaagagtgaggattggcagtaacttttcaagcttgcttgactaacatagatagattaaaaataaactatc |
52126189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 52126181 - 52126353
Alignment:
| Q |
52 |
taaactatcaatcatattacgacgaagtacatatgtttctctaactaaaattcatattatcatcaattctcgcctgcacagaaaatatttggctctgaga |
151 |
Q |
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|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||| ||||| |
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| T |
52126181 |
taaactatcagtcttattacgacgaagtgcatatgtttctctaactaaaattcatattattacgaattctcgcctgcgcagaaaatatatggctttgaga |
52126280 |
T |
|
| Q |
152 |
acttaagtcaccaaagagtgaggattggcaaaaacttttcaagcttgcttgactaacatagatagattaaaaa |
224 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52126281 |
acttaagtcaccaaagagtgaggattgacaataacttttcaagcttgcttgactaacatagatagattaaaaa |
52126353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 19959700 - 19959659
Alignment:
| Q |
133 |
aaaatatttggctctgagaacttaagtcaccaaagagtgagg |
174 |
Q |
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| T |
19959700 |
aaaatatttggctttgagaacttgagtcaccaaagaatgagg |
19959659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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