View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_low_50 (Length: 237)
Name: NF17083_low_50
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 42900355 - 42900311
Alignment:
| Q |
18 |
atcagaggaggaacttatcaaagtaagacaacatatattagaaag |
62 |
Q |
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| T |
42900355 |
atcagaggaggaacttatcaaagtaagacaacatatattagaaag |
42900311 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 42900211 - 42900168
Alignment:
| Q |
178 |
aaagttaaaattaatcagaagtctcaaacaataaactcattttg |
221 |
Q |
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| T |
42900211 |
aaagttaaaattaatcagaagtctcaaacgataaacccattttg |
42900168 |
T |
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