View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_low_9 (Length: 478)
Name: NF17083_low_9
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 36417868 - 36417446
Alignment:
| Q |
1 |
actgctgataaaacacttcagtctggattggcacacagaatatccaaatgacaaaagaattggcataaatcggccccctttaaagtctcatcatttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417868 |
actgctgataaaacacttcagtctggattggcacacagaatatccaaatgaccaaagaattggcataaatcggccccctttaaagtctcatcatttgtgt |
36417769 |
T |
|
| Q |
101 |
ggcgggtgtttctaagtctatgtgttgggacttggggagtgtggtgtggtagagacagttcagaatcaaatggcaaccactcaaaaaatataagaatagg |
200 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417768 |
ggcgtgtgtttctaagtct--gtgttgggacttggggagtgtggtgtggtagagacagttcagaatcaaatggcaaccactcaaaaaatataagaatagg |
36417671 |
T |
|
| Q |
201 |
ggatagcaacccaaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctac |
300 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
36417670 |
ggatatcatcccaaaaaataaatcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctac |
36417571 |
T |
|
| Q |
301 |
aagaattgcagccaacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacact |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417570 |
aagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacact |
36417471 |
T |
|
| Q |
401 |
taaaagtggtgtcaaatttataaac |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36417470 |
taaaagtggtgtcaaatttataaac |
36417446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 230 - 425
Target Start/End: Complemental strand, 36412310 - 36412115
Alignment:
| Q |
230 |
ccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagccaacctctttttatcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36412310 |
ccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaa |
36412211 |
T |
|
| Q |
330 |
ggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgtcaaatttataaac |
425 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412210 |
ggactcctttgctttttttgttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgtcaaatttataaac |
36412115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 160 - 420
Target Start/End: Complemental strand, 36426539 - 36426278
Alignment:
| Q |
160 |
tcagaatcaaatggcaaccactcaaaaaatataagaataggggatagcaacccaaaaaatatatcacataccctttctctttttcttccacatgtaattc |
259 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36426539 |
tcagaatcaaatggcaaccactgaaaaaatataagaacaggggatatcatcccaaaaaataaattacataccctttctctttttcttccacatgtaattc |
36426440 |
T |
|
| Q |
260 |
acacagaagaagaggatgataattgcaactatagaagctacaagaattgcagccaacctctttttatcaaggactcctttgcnnnnnnngttgtaattag |
359 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||| |||| |
|
|
| T |
36426439 |
acacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttgccaaggactcctttgctttttttgtcgtagttag |
36426340 |
T |
|
| Q |
360 |
ctga---taagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgtcaaattta |
420 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
36426339 |
ctgacgctaagaagaaacaagtccaaagaagtttaaactacac--ataagtggtgtcaaattta |
36426278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 213 - 462
Target Start/End: Complemental strand, 36398070 - 36397824
Alignment:
| Q |
213 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
312 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||| ||||||||||| ||| |||| | |||| |||| |
|
|
| T |
36398070 |
aaaaaatcaatcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagc |
36397971 |
T |
|
| Q |
313 |
caacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
36397970 |
caacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaagaaacaagtccagagaagtttaaactacac--ataagtggtgt |
36397873 |
T |
|
| Q |
413 |
caaatttataaacnnnnnnnncagtaggagggaatatcttaccaagttca |
462 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36397872 |
caaattta-gaagaaaaaaaacagtaggagggaatatcttaccaagttca |
36397824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 213 - 420
Target Start/End: Complemental strand, 36405005 - 36404800
Alignment:
| Q |
213 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
312 |
Q |
| |
|
|||||| | ||| |||||||||| | |||||||||||||||||||| |||||| ||| |||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
36405005 |
aaaaaaaaaatcgcataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagc |
36404906 |
T |
|
| Q |
313 |
caacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgt |
412 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||||| || | ||||||||||| |||||||||||| || | ||||| ||| |
|
|
| T |
36404905 |
caacctctttttgtcaagtgctcctttgctttttttgttgtaattagctgatataaagatacaagtccaaataagtttaaactatac--ataagtgctgt |
36404808 |
T |
|
| Q |
413 |
caaattta |
420 |
Q |
| |
|
|||||||| |
|
|
| T |
36404807 |
caaattta |
36404800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 36427846 - 36427717
Alignment:
| Q |
1 |
actgctgataaaacacttcagtctggattggcacacaga--atatccaaatgacaaaagaattggcataaatcggccccctttaaagtctcatcatttgt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||| | |
|
|
| T |
36427846 |
actgctgataaaacacttcagtctggattggcacacagagaatatccaaatgacaaaagaattgacataaatcttccccctttaaagactcgtcatttct |
36427747 |
T |
|
| Q |
99 |
gtggcgggtgtttctaagtctatgtgttgg |
128 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |
|
|
| T |
36427746 |
gtggcgtgtgtttctaagtttatgtgttgg |
36427717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 213 - 339
Target Start/End: Complemental strand, 36388291 - 36388165
Alignment:
| Q |
213 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
312 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||| ||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
36388291 |
aaaaaataaatcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagc |
36388192 |
T |
|
| Q |
313 |
caacctctttttatcaaggactccttt |
339 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
36388191 |
caacctctttttatcaagaactccttt |
36388165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 36434324 - 36434194
Alignment:
| Q |
214 |
aaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaaga---ggatgataattgcaactatagaagctacaagaattgca |
310 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||||| || ||| ||||||| ||| || ||| ||||| ||||||||||||||||| | ||||||| |
|
|
| T |
36434324 |
aaaaataaattacataccctttgtttttttcttccacttgcaatacacacaggagaggacgaggacgataacagcaactatagaagctaccaaaattgca |
36434225 |
T |
|
| Q |
311 |
gccaacctctttttatcaaggactcctttgc |
341 |
Q |
| |
|
|||||||| || |||| | ||||||| |||| |
|
|
| T |
36434224 |
gccaaccttttcttatgagggactccgttgc |
36434194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36405539 - 36405468
Alignment:
| Q |
1 |
actgctgataaaacacttcagtctggattggcacacaga--atatccaaatgacaaaagaa-ttggcataaat |
70 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
36405539 |
actgctaataaaatactt-agtctggattggcacacacattatatccaaatgacaaaagaatttggcataaat |
36405468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 341
Target Start/End: Complemental strand, 36374326 - 36374207
Alignment:
| Q |
222 |
atcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagccaacctctt |
321 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || || |||| || ||| ||||| || ||| |||||| ||||||| || |||||||||| | |||||| |
|
|
| T |
36374326 |
atcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaatcctctt |
36374227 |
T |
|
| Q |
322 |
tttatcaaggactcctttgc |
341 |
Q |
| |
|
|| | | ||||||||||||| |
|
|
| T |
36374226 |
ttgacctaggactcctttgc |
36374207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 36412099 - 36412071
Alignment:
| Q |
434 |
cagtaggagggaatatcttaccaagttca |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36412099 |
cagtaggagggaatatcttaccaagttca |
36412071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 36417430 - 36417402
Alignment:
| Q |
434 |
cagtaggagggaatatcttaccaagttca |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36417430 |
cagtaggagggaatatcttaccaagttca |
36417402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University