View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_high_15 (Length: 324)
Name: NF17084_high_15
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 38126710 - 38127016
Alignment:
| Q |
1 |
taggttctgcttgtgttgtagttttggttatataactggagtgtcatatttggtggagtgatttcttgtttatagtacaagcattggtctaatctttgcg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38126710 |
taggttctgcttgtgtcgtagttttggttatataactggagtgtcatatttggtggagtgatttcttgtgtatagtacaagcattggtctaatctttgcg |
38126809 |
T |
|
| Q |
101 |
tatcttgtgtttagactatattttacttctagatttttcattttaaaaagaagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaat |
200 |
Q |
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||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126810 |
tatcttgcgtctagactatattttacttctaga-ttttcattttaaaaaggagtttgtgctatatatcaaacttaaaccttctaccaggaacacctaaat |
38126908 |
T |
|
| Q |
201 |
gagagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagtttt |
300 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38126909 |
gagagatgataatgaatctcttc-tggcttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagaatttt |
38127007 |
T |
|
| Q |
301 |
gtcattcat |
309 |
Q |
| |
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||||||||| |
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| T |
38127008 |
gtcattcat |
38127016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 38127110 - 38127215
Alignment:
| Q |
203 |
gagatgataatgaatctcttcaagacttaactagaggttttgagttcgaatcaaactctcggaatgtaa----caatgttaaatcttttgaggaagagtt |
298 |
Q |
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| T |
38127110 |
gagatgataatgaatctctttcag-cttagctagaggttttgagttcgaatccagctctcggaacgcaataattaatgttaaatctcttgatgaagaatt |
38127208 |
T |
|
| Q |
299 |
ttgtcat |
305 |
Q |
| |
|
||||||| |
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| T |
38127209 |
ttgtcat |
38127215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 15064322 - 15064366
Alignment:
| Q |
265 |
aatgtaacaatgttaaatcttttgaggaagagttttgtcattcat |
309 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||| |||||||| |
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| T |
15064322 |
aatgtatcaatgttaaatcttttgaagaagagttttatcattcat |
15064366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 8168951 - 8168877
Alignment:
| Q |
229 |
ttaactagaggttttgagttcgaatcaaactctcggaatgtaacaatgttaaatcttttgaggaagagttttgtca |
304 |
Q |
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| T |
8168951 |
ttaactagaggttt-gagttcgaatctaattatgagaatgcagcaatgttaaatcttttgaaggagagttttgtca |
8168877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 37438311 - 37438270
Alignment:
| Q |
243 |
tgagttcgaatcaaactctcggaatgtaacaatgttaaatct |
284 |
Q |
| |
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|||||| ||||| |||||| |||||||||||||||||||||| |
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| T |
37438311 |
tgagtttgaatccaactctgggaatgtaacaatgttaaatct |
37438270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 7163920 - 7163952
Alignment:
| Q |
272 |
caatgttaaatcttttgaggaagagttttgtca |
304 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
7163920 |
caatgttaaatctattgaggaagagttttgtca |
7163952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 15052033 - 15052066
Alignment:
| Q |
277 |
ttaaatcttttgaggaagagttttgtcattcatc |
310 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
15052033 |
ttaaatcttttgagaaagagttttgtcattcatc |
15052066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 43346398 - 43346361
Alignment:
| Q |
264 |
gaatgtaacaatgttaaatcttttgaggaagagttttg |
301 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||| |
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| T |
43346398 |
gaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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