View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_high_18 (Length: 295)
Name: NF17084_high_18
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 30114570 - 30114834
Alignment:
| Q |
12 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
111 |
Q |
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| T |
30114570 |
atgaaaaacttccaaccaataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaagg |
30114669 |
T |
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| Q |
112 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114670 |
tgatacatactttcacttggtaaatgaaacttaccaaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttctgaaaacattgcaatt |
30114769 |
T |
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| Q |
212 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaaaacaggtggcgaaagggat |
276 |
Q |
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| T |
30114770 |
ggtgccgaggtaacagttccagtactttgtgcttgtcctacaacaacacagatggcgaaagggat |
30114834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 30116965 - 30117155
Alignment:
| Q |
29 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtc-caaaaaggtgatacatactttcac |
127 |
Q |
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||||||| |||| |||||||||||| || |||| ||| ||||||||||||||||||||||| || ||||||||| ||||||||||| | || | |||| |
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| T |
30116965 |
aataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaacataacaccccctacactgtcaaaaaaaggtgattcctattatcac |
30117064 |
T |
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| Q |
128 |
ttggtaaatgaaacttacc----aaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttc--tgaaaacattgcaattg |
212 |
Q |
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| T |
30117065 |
ttggtaaatggtacttaccaaagaaagcctcacgccatgtcaggctacgaagggtcagaattactatgcttctgtgaaaacatttcaattg |
30117155 |
T |
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