View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_high_22 (Length: 264)
Name: NF17084_high_22
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_22 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 2345641 - 2345384
Alignment:
| Q |
7 |
aagaatatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaagatcagaatgattcacactattcttttcttttttgtt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2345641 |
aagaatatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaaaatcagaatgattcacactattcttttcttttttgtt |
2345542 |
T |
|
| Q |
107 |
cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2345541 |
cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactcccaaacaccccttcaggctatccatgcaaatcagaaacaaatg |
2345442 |
T |
|
| Q |
207 |
taacagtgaatgattttgtgttctctggcttagtacctggaagcacaataaacccttt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2345441 |
taacagtgaatgattttgtgttctctggcttagtacctggaagcacaataaacccttt |
2345384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 7321812 - 7321933
Alignment:
| Q |
135 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
234 |
Q |
| |
|
||||||| ||||| ||||| |||| || |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7321812 |
atgatttctgtgtggcagatttacagcttccaaacactccttcaggctatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctgg |
7321911 |
T |
|
| Q |
235 |
cttagtacctggaagcacaata |
256 |
Q |
| |
|
||| ||||| |||||||||||| |
|
|
| T |
7321912 |
ctttgtacccggaagcacaata |
7321933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 7319492 - 7319621
Alignment:
| Q |
135 |
atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg |
234 |
Q |
| |
|
||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| | |
|
|
| T |
7319492 |
atgatttctgtgttgcagacttacagcttccaaataccccttcaggctatccatgcaagtcagaaacaaatgtaacagtggatgattttttattctccga |
7319591 |
T |
|
| Q |
235 |
cttagtacctggaagcacaataaacccttt |
264 |
Q |
| |
|
||| |||||| ||| ||||||| ||||||| |
|
|
| T |
7319592 |
ctttgtacctagaaacacaatagacccttt |
7319621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 7324576 - 7324682
Alignment:
| Q |
132 |
ctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctc |
231 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||| |||||||||| |||||||||||||| || |||| |||||||||| |||||||||| ||||| |
|
|
| T |
7324576 |
ctgatgatttctgtgtagcagacttatcgtttccagacaccccttcgggctatccatgcaagtcggaaaacaatgtaacagctgatgattttgtattctc |
7324675 |
T |
|
| Q |
232 |
tggctta |
238 |
Q |
| |
|
||||||| |
|
|
| T |
7324676 |
tggctta |
7324682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 7318628 - 7318518
Alignment:
| Q |
132 |
ctgatgatttatgtgtagcagacttactact---accaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgtt |
228 |
Q |
| |
|
|||||||||| ||||||||| ||||| | || | || ||||||||||||||||||||||||||||||||| | |||||||| | ||||||| ||| |
|
|
| T |
7318628 |
ctgatgatttctgtgtagcaaacttatttcttacatcagacaccccttcaggctatccatgcaaatcagaaaaatttgtaacagcggatgatttcatgta |
7318529 |
T |
|
| Q |
229 |
ctctggcttag |
239 |
Q |
| |
|
|||| |||||| |
|
|
| T |
7318528 |
ctctagcttag |
7318518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 32984137 - 32984186
Alignment:
| Q |
77 |
atgattcacactattcttttcttttttgttcttctctcatcatatacctc |
126 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
32984137 |
atgaatcacattattgttttcttttttgttctcctctcatcatatacctc |
32984186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 32984274 - 32984314
Alignment:
| Q |
208 |
aacagtgaatgattttgtgttctctggcttagtacctggaa |
248 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
32984274 |
aacagtggatgattttgtgttctctggctttgtacctggaa |
32984314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 32984243 - 32984271
Alignment:
| Q |
168 |
acaccccttcaggctatccatgcaaatca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32984243 |
acaccccttcaggctatccatgcaaatca |
32984271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 6521346 - 6521374
Alignment:
| Q |
168 |
acaccccttcaggctatccatgcaaatca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6521346 |
acaccccttcaggctatccatgcaaatca |
6521374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University