View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17084_high_28 (Length: 240)

Name: NF17084_high_28
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17084_high_28
NF17084_high_28
[»] chr7 (3 HSPs)
chr7 (1-87)||(32895279-32895365)
chr7 (110-198)||(32895197-32895285)
chr7 (14-90)||(37577821-37577897)
[»] chr5 (4 HSPs)
chr5 (14-144)||(25470014-25470141)
chr5 (14-82)||(32763600-32763668)
chr5 (14-90)||(25477983-25478059)
chr5 (34-90)||(32768610-32768666)
[»] chr1 (1 HSPs)
chr1 (14-94)||(17592875-17592957)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32895365 - 32895279
Alignment:
Q  1 aaaacaaaaagaacaaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32895365 aaaacaaaaagaacaaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagg 32895279  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 32895285 - 32895197
Alignment:
Q  110 gataaggtggatggttgcctgctcttggatgtagtgatggtgatgacgcagtggtcatctagtccccaatttggtggagcataagcatg 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32895285 gataaggtggatggttgcctgctcttggatgtagtaatggtgatgacgcagtggtcatctagtccccaatttggtggagcacaagcatg 32895197  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 37577897 - 37577821
Alignment:
Q  14 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagggtc 90  Q
    |||||||||||||| | ||| ||||||||||||||||||| || ||||||| | ||||||||||||||| |||||||    
T  37577897 caaaagtcaaagacccaatgttatcaataatgtatgacttctcaacttatatggtgattgtcttcatgacaagggtc 37577821  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 25470141 - 25470014
Alignment:
Q  14 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagggtcgtcgctgacggcggtgaaagata 113  Q
    ||||||||| || || |||| |||||||||| ||| | ||||||||||||||| |||||||||||||||||  ||||| || || | ||||   | |||     
T  25470141 caaaagtcataggctatatgttatcaataatatattaattttctacttatagggtgattgtcttcatgatacaggtcgccgatggcagcgg---atgatg 25470045  T
Q  114 aggtggatggttgcctgctcttggatgtagt 144  Q
    |||| ||||||||||||||||||||||||||    
T  25470044 aggttgatggttgcctgctcttggatgtagt 25470014  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 32763668 - 32763600
Alignment:
Q  14 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatga 82  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| || || ||||| |||||||||    
T  32763668 caaaagtcaaagactctatgttatcaataatgtatgacttctctactaattgggtgattatcttcatga 32763600  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 25478059 - 25477983
Alignment:
Q  14 caaaagtcaaagactctatgctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagggtc 90  Q
    ||||||||| ||||| |||| |||||||||| ||||| ||||||||||||| | |||||||||| |||||| |||||    
T  25478059 caaaagtcatagactatatgttatcaataatatatgatttttctacttatatggtgattgtcttaatgatacgggtc 25477983  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 32768666 - 32768610
Alignment:
Q  34 ctatcaataatgtatgacttttctacttataggctgattgtcttcatgataagggtc 90  Q
    ||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||    
T  32768666 ctatcaataatgtattactttactacttatagggtgtttgtcttcatgataagggtc 32768610  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 17592957 - 17592875
Alignment:
Q  14 caaaagtcaaagactctatgct--atcaataatgtatgacttttctacttataggctgattgtcttcatgataagggtcgtcg 94  Q
    |||||||| ||||||||||| |  |||||||||| ||||||| |||||||||||   ||||||||||||||||||||||||||    
T  17592957 caaaagtcgaagactctatgttttatcaataatgcatgacttctctacttatagtgcgattgtcttcatgataagggtcgtcg 17592875  T

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