View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_high_29 (Length: 234)
Name: NF17084_high_29
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 5798888 - 5798650
Alignment:
| Q |
1 |
tcttttttatatcttatttggtttatcaacatatttccttttctatagcttcattaattcaacatagactatggggttcaacaagcattataagcaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5798888 |
tcttttttatatcttatttggtttatcaacatatttccttttctatagctgcattaattcaacatagactatggggttcaacaagcattataagcaatga |
5798789 |
T |
|
| Q |
101 |
tattccttaatatccctactgtcttgttgattaatctagtgt--gtgtatatatatacaattcagtattgttctgatatac----aagtctcatgatgct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5798788 |
tattccttaatatccctactgtcttgttgattaatctagtgtgtgtgtatgtatatacaattcagtattgttctgatataccttaaagtctcatgatgct |
5798689 |
T |
|
| Q |
195 |
tgagaattgaggttaataatagtttataaacaacaccta |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5798688 |
tgagaattgaggttaataatagtttataaacaacaccta |
5798650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University