View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_high_4 (Length: 567)
Name: NF17084_high_4
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 3 - 548
Target Start/End: Original strand, 38237416 - 38237963
Alignment:
| Q |
3 |
caaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcaggcacaaaatatgtttgggag |
102 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38237416 |
caaaaagcatttgcaagctcaaatcaacttgcaactcatcctcccagttttcggaagaaatacttttcaaaacaaagcaggcacaaaatatgtttgggag |
38237515 |
T |
|
| Q |
103 |
ggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237516 |
ggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttct |
38237615 |
T |
|
| Q |
203 |
gatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatcatgag |
302 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237616 |
ggtgcccctaacgaagctttgagtttcctatcaaattcagtttgtgtctc-agcttctagtaatggtctagttgttggtcacaccattaatgatcatgag |
38237714 |
T |
|
| Q |
303 |
tttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctggatatggagtataatgtt |
402 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
38237715 |
tttgtagtatgtaatccagttacaaagtcctggtcttcaattccaacccccaagtcatttcaaagaaaccatagttttgctggagatggagtataatgtt |
38237814 |
T |
|
| Q |
403 |
tcagaagtgacttgcttgaatcaacaatcgaatcatc----ttaccactcatgaaggaacttcagcttaaagcaatgtgattgattaagaagcattcctt |
498 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38237815 |
tcagaagtgacttgtttgaatcaacaatcgaatcatcttaattaccactcatgaaggaacttcagc-taaagcaatgtgattgattaagaagcattcctt |
38237913 |
T |
|
| Q |
499 |
aataaaggcatatagaacttgttattgacaataaaatgtcaagtgtgtca |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237914 |
aataaaggcatatagaacttgttattgacaataaaatgtcaagtgtgtca |
38237963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 2 - 381
Target Start/End: Original strand, 38253884 - 38254257
Alignment:
| Q |
2 |
gcaaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcaggcacaaaatatgtttggga |
101 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38253884 |
gcaaaaggcatttgcaagctcaaatcaacttgcaattcatcctcccagttttcggaagaaacacttttcaaaacaaagcaggcacataatatgtttggga |
38253983 |
T |
|
| Q |
102 |
gggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttc |
201 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||| |||| |
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| T |
38253984 |
ggggtgacacatgcttcttcattcttcaacccgatcaaataggtcgaagttatactgaaatagtagagttacattctttac---------------cttc |
38254068 |
T |
|
| Q |
202 |
tgatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatca--- |
298 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38254069 |
tggtgcccctaacaaagctttgagtttcctatcaaattcagtttctgtct-tagcttctagtaatggtctagttgttggtcacatcattaatgatcatga |
38254167 |
T |
|
| Q |
299 |
------tgagtttgtagtatgtaatccagttataaagttctggtc-ttcaattccaacccctgagtcatttcgaagaaaccatagttttg |
381 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||| |||| |||| || ||||||||||||| ||||||||||||||||| |
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|
| T |
38254168 |
tccgattgagtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcatttcaaagaaaccatagttttg |
38254257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 4 - 301
Target Start/End: Original strand, 38248757 - 38249050
Alignment:
| Q |
4 |
aaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcaggcacaaaatatgtttgggagg |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || | |||| ||||||| | |||| |||||||||||||| | ||| |||| |||| | |
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|
| T |
38248757 |
aaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaattttcggaagaagctgtttttaaaacaaagcaggctcgtaatctgttcgggaag |
38248856 |
T |
|
| Q |
104 |
gatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttctg |
203 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||| ||||| ||||| ||| |||| |||| || ||||||||| |||||||||||||||| | |
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|
| T |
38248857 |
gatgatacatgtttcttcattc---aacccgatcaaataagccaaaggtacacaaaaagagtacagttgcattctttacctgaaaaccgacaatcttcgg |
38248953 |
T |
|
| Q |
204 |
atgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
301 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38248954 |
gtgcccctaacaaagctttgagttttctatcaaattcaatttgtgtct-tagcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
38249050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 385
Target Start/End: Original strand, 22176817 - 22177207
Alignment:
| Q |
2 |
gcaaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcaggcacaaaatatgtttggga |
101 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
22176817 |
gcaaaaagcatttgcaagttcaaatcaacttgcaactcatcctccgagttttcggaagaaacactttccaaaacaaagcaggcacataatatgtttggga |
22176916 |
T |
|
| Q |
102 |
gggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||| |
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|
| T |
22176917 |
gggatgacacatgcttcttcattcttcgacccgatcaaataagtcaaagttacactgaaatagtagagtcacattctttgcctcaagatcgacaatcttc |
22177016 |
T |
|
| Q |
202 |
tgatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatca--- |
298 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||| ||||| ||| |
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|
| T |
22177017 |
tggtgcccctaaacaagctttgagattcctatcaaattcagtttgtgtct-taggttctagtaatggtctagttgttgg-gacaccactaatggtcatga |
22177114 |
T |
|
| Q |
299 |
------tgagtttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctgg |
385 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| |||||||||| |||| || ||||||||||||| |||||| |||||||||||||| |
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|
| T |
22177115 |
ttggattgagtttgtaatatgtaatctagttacaaagtcctggtcttcacttcctactcctgagtcatttcaaagaaatcatagttttgctgg |
22177207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 385 - 548
Target Start/End: Original strand, 37069866 - 37070025
Alignment:
| Q |
385 |
gatatggagtataatgtttcagaagtgacttgcttgaatcaacaatcgaatcatcttaccactcatgaaggaacttcagcttaaagcaatgtgattgatt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| | |
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| T |
37069866 |
gatatggagtataatgtttcagaagtgacttacttgaatcaacaattgaatcatcttaccactcatgaaggaacttcaac-taaagcaatgtgattgcat |
37069964 |
T |
|
| Q |
485 |
aagaagcattccttaataaaggcatatagaacttgttattgacaataaaatgtcaagtgtgtca |
548 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069965 |
aagaagcattcct---taaaggcatatagaacttgttattgacaataaaatgtcaagtgtgtca |
37070025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 213 - 384
Target Start/End: Original strand, 20656606 - 20656785
Alignment:
| Q |
213 |
acgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatca---------tgagt |
303 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20656606 |
acgatgctttgagtttcctatcaaattcagtttgtgtctta-gcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagt |
20656704 |
T |
|
| Q |
304 |
ttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctg |
384 |
Q |
| |
|
||| | |||||||||||||| ||||| ||||||||| |||| |||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
20656705 |
ttggaaaatgtaatccagttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctg |
20656785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 254 - 384
Target Start/End: Complemental strand, 20656460 - 20656321
Alignment:
| Q |
254 |
agcttctagtaatggtctagttgttggtcacaccattaatgatcatgagt---------ttgtagtatgtaatccagttataaagttctggtcttcaatt |
344 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||| |||||||||| || |
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|
| T |
20656460 |
agcttatagtaatgatctagttgttggtcacaccattaatgatcatgattcgattgaaattgtaatatgtaatccagttacaaagtcctggtcttcactt |
20656361 |
T |
|
| Q |
345 |
ccaacccctgagtcatttcgaagaaaccatagttttgctg |
384 |
Q |
| |
|
|| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
20656360 |
cctacccctgagtcatttcaaagaaatcatagttttgctg |
20656321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 12036337 - 12036252
Alignment:
| Q |
299 |
tgagtttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctg |
384 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||||||||||||| |
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|
| T |
12036337 |
tgagtttgtaatatgtaattcagttacaaagtcctggtcttcacttcctaccccggagtcatttcaaagaaaccatagttttgctg |
12036252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 12036383 - 12036430
Alignment:
| Q |
254 |
agcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
301 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
12036383 |
agcttgtagtaatgatctagttgttggtcacaccattaacgatcatga |
12036430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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