View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_high_5 (Length: 498)
Name: NF17084_high_5
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 47 - 481
Target Start/End: Complemental strand, 54791988 - 54791554
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctataa |
146 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54791988 |
gtacctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctataa |
54791889 |
T |
|
| Q |
147 |
gnnnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
246 |
Q |
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| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791888 |
gtttttttctactcttctgcttcaatgatcatacaagaatagaaaaaaatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
54791789 |
T |
|
| Q |
247 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791788 |
agattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatact |
54791689 |
T |
|
| Q |
347 |
tatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791688 |
tatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatc |
54791589 |
T |
|
| Q |
447 |
tgaaattgttctcagccttcctttgttccgaaggt |
481 |
Q |
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| T |
54791588 |
tgaaactgttctcagccttcctttgttccgaaggt |
54791554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 51 - 477
Target Start/End: Original strand, 54777160 - 54777588
Alignment:
| Q |
51 |
ctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctat--aagn |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
54777160 |
ctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctatgcaagt |
54777259 |
T |
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| Q |
149 |
nnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
248 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777260 |
ttttttctactcttctgcctcaatgatcgtacaagaatagaaaaacatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
54777359 |
T |
|
| Q |
249 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatactta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54777360 |
attctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtcattctcctccagcatcctacttaaggacatggtcttctcattatactta |
54777459 |
T |
|
| Q |
349 |
tactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctg |
448 |
Q |
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||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
54777460 |
taccgaattatgttgaggttttcatttggaatgtcaatttcattggtcaggttttcccgtttgctattttctctttcagatgcttcttgaacaatatccg |
54777559 |
T |
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| Q |
449 |
aaattgttctcagccttcctttgttccga |
477 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
54777560 |
aaattgttctcagccttcctttgttccga |
54777588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 155 - 481
Target Start/End: Complemental strand, 52284538 - 52284212
Alignment:
| Q |
155 |
ctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcagattcta |
254 |
Q |
| |
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||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
52284538 |
ctactctactgcttcaatgaacgtacaagaatataaaaacatacatggccaaacttgaagcacacggcctttacatacaataagacaaaatcagattcta |
52284439 |
T |
|
| Q |
255 |
acagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggacatggtcttctcattatacttatactgc |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |
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| T |
52284438 |
acagaaattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaagacatggtcttctcgttatacttatattgc |
52284339 |
T |
|
| Q |
355 |
attttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctgaaattg |
454 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284338 |
attttgttgaggttttcatttgtaatatcaatttcattagccaggttttccacaatgctatttctgctttcagatgcttcttgaacaatatctgaaattg |
52284239 |
T |
|
| Q |
455 |
ttctcagccttcctttgttccgaaggt |
481 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
52284238 |
ttctcagccttcctttgttccgaaggt |
52284212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 229 - 481
Target Start/End: Complemental strand, 799734 - 799482
Alignment:
| Q |
229 |
atacaataaggcaaaatcagattctaacagacattatacaaaccttcaacaaaagcattgtgaagcctgtctttctcctccagcatcctacttaaggaca |
328 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
799734 |
atacaataaggcaaaatcagattataacagaaattatacaaaccttcaacaaaagcactgtgaagtttgtctttctcctccagcatcctactcaaggaca |
799635 |
T |
|
| Q |
329 |
tggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatgctatttctgctttcaga |
428 |
Q |
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| ||||||||||||||| |||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
799634 |
tagtcttctcattatacctatactgcatcttgttgagattttcattagtaatatcaatctcatttgccaggttttccacaatgctatttctgctttgaga |
799535 |
T |
|
| Q |
429 |
tgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggt |
481 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
799534 |
tgcttcttgaactatatctgaaattgtcctcagccttcctttgttgcgaaggt |
799482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 799836 - 799796
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactct |
87 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
799836 |
gtacctcatcacgagctttacgctgcatgctccttgactct |
799796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 52284655 - 52284615
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactct |
87 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
52284655 |
gtacctcttcacgagctttacgctgcatgctccttgactct |
52284615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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