View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_high_6 (Length: 464)
Name: NF17084_high_6
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 50595065 - 50594626
Alignment:
| Q |
1 |
tcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccact-gttttcaccaaccacttccaattaacacataaaaattat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50595065 |
tcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccacttgttttcaccaaccacttccaattaacacataaaaattat |
50594966 |
T |
|
| Q |
100 |
cactaatactcataaccacaagactcttaccacataactaatactattattttaacattaaccatgactacaagcnnnnnnntttcatatactatattaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||| |
|
|
| T |
50594965 |
cactaatactcataaccacaagactcttaccacacaactaatactattattttaacattaaccatgactacaggcaaaaaaaattcatatgctat--taa |
50594868 |
T |
|
| Q |
200 |
gtaattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaatacaaacatgatttttaactctca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50594867 |
gtaattaagtaatacattgttcataacatggataaatccacttatttat--ttagatttttaattaagtgatacaatacaaacatgatttttaactctca |
50594770 |
T |
|
| Q |
300 |
ctttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccagatagaga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50594769 |
ctttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccacatagaga |
50594670 |
T |
|
| Q |
400 |
cactcttttgcttctctccacaatgccttataaaatggtgtatc |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50594669 |
cactcttttgcttctctccacaatgccttataaaatggtgtatc |
50594626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 446
Target Start/End: Complemental strand, 1897455 - 1897222
Alignment:
| Q |
202 |
aattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgatacaatacaa-acatgatttttaactctcac |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||| | ||| | | |||||||||||||||| ||| |||||| || |||||| |
|
|
| T |
1897455 |
aatttagtaatacattgttcataacatggacaaatccacttattta------gctttttgaccaagtgatacaatacaagacaagattttcaagtctcac |
1897362 |
T |
|
| Q |
301 |
tttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatcttgctccagatagagac |
400 |
Q |
| |
|
| ||| | | |||||| |||| ||||||||||||||||| || |||||||| | ||||||||||||||| ||||||| |||| | |||||||| |
|
|
| T |
1897361 |
atcatgattc---atgcatacttt---attcatcaaaacttgttcatggaccaataattaaccttttgagatgttctttcatctggctcaacatagagac |
1897268 |
T |
|
| Q |
401 |
actcttttgcttctctccacaatgccttataaaatggtgtatcatc |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
1897267 |
actcttttgcttttctccacaatgccttggaaaattatgtatcatc |
1897222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University