View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_high_8 (Length: 426)
Name: NF17084_high_8
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 38126330 - 38126720
Alignment:
| Q |
18 |
aatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcataggtctctatgtagatatagatcaggaaaactgacatata |
117 |
Q |
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| T |
38126330 |
aatttgagggttggcaaaggaaatatcaactgcaggatttattactagggattacttcataggtctctatgtagatatagatcaggaaaactgacatata |
38126429 |
T |
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| Q |
118 |
tgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacatatgttgcttattttgcaagttttctactgtatacatgg |
217 |
Q |
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| T |
38126430 |
tgacaatatcttcatataaactagaagtagaagtttagacaaacagaaatatagattgacatatgttgcttattttgcaagttttctactgtatacatgg |
38126529 |
T |
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| Q |
218 |
tcctcagatcaaacctataacatgtaggattagttcacttattttaatgcacattccttaagttttatttctccatatttttgagaaatatttattaaat |
317 |
Q |
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| T |
38126530 |
tccttagatcaaacctataacatgtaggattagttcacttattttaat--------------tcttatttctccatatttttgagaaatatttattaaat |
38126615 |
T |
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| Q |
318 |
atatgcatgccttattagttggaatgcatttgacactgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatacacaggtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
38126616 |
atatgcatgccttattagttggaatgcatttgacactgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatatataggtt |
38126715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 39708558 - 39708616
Alignment:
| Q |
258 |
attttaatgcacattccttaagttttatttctccata-tttttgagaaatatttattaa |
315 |
Q |
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| T |
39708558 |
attttaatgcacattccttaagtcttatttctccatattttttcagaaatgtttattaa |
39708616 |
T |
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