View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_11 (Length: 409)
Name: NF17084_low_11
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 43989458 - 43989866
Alignment:
| Q |
1 |
ccgaggacaatatgacaatgggctctaaaacatgaggaattcnnnnnnngctgagacacgggttacttacataagaagtatcttttaagaaacatgtctc |
100 |
Q |
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| T |
43989458 |
ccgaggacaatatgacaatgggctctaaaacatgaggaattctttttttgctgagacacgggttacttacataagaagtatcttttaagaaacatgtctc |
43989557 |
T |
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| Q |
101 |
cttgggtttgtttaccgggtggtcgatttacaatagnnnnnnnttgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcg |
200 |
Q |
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| T |
43989558 |
cttgggtttgtttaccgggtagtcgatttacaatagaaaaaaattgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcg |
43989657 |
T |
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| Q |
201 |
aactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatgaattcatcatctgggtcgacgtcactcactaccagcaagtaattaag |
300 |
Q |
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| T |
43989658 |
aactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatgaattcatcatctgggtcgacgtcactcactaccagcaagtaattaag |
43989757 |
T |
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| Q |
301 |
aagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagcaactatagtaaaaccatcatcaaggcaaa |
400 |
Q |
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| T |
43989758 |
aagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagcaactatagtaaaaccatcatcaaggcaaa |
43989857 |
T |
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| Q |
401 |
aacacaaaa |
409 |
Q |
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| T |
43989858 |
aacacaaaa |
43989866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 42416023 - 42415922
Alignment:
| Q |
304 |
cagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagcaactatagtaaaaccatcatcaaggcaaaaac |
403 |
Q |
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| T |
42416023 |
cagtctattacaaaaagcagcagccagtagtctttgcagacatgacaagtcgataattaactagaagcagc--aagtaaaaccaatatcaaggcaaaaac |
42415926 |
T |
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| Q |
404 |
acaa |
407 |
Q |
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|||| |
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| T |
42415925 |
acaa |
42415922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 43918237 - 43918156
Alignment:
| Q |
283 |
taccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaacca |
366 |
Q |
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| T |
43918237 |
taccagcaagtaattatgaagcagtcttttacaagaagtctgagct--tcatcattgcagacacaagaagtcgataactaacca |
43918156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 44003300 - 44003356
Alignment:
| Q |
282 |
ctaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatcttt |
338 |
Q |
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| T |
44003300 |
ctacccgcaagtaattatgcagcagtctgttataaaaagcatcagccagtagtcttt |
44003356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 8831177 - 8831301
Alignment:
| Q |
281 |
actaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagcaactatagt |
380 |
Q |
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||||||||| |||||||| | ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| ||||| | |||| |
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| T |
8831177 |
actaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagacacaagaagtcaataactaaccaaaagcagc--tagt |
8831274 |
T |
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| Q |
381 |
aaaaccatcatcaaggcaaaaacacaa |
407 |
Q |
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|||| | ||||||||||||||||||| |
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| T |
8831275 |
aaaattagcatcaaggcaaaaacacaa |
8831301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 8831036 - 8831116
Alignment:
| Q |
145 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttac |
225 |
Q |
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|||||| || ||||||||| |||||||||||||| ||| || |||||||||| ||||| |||||||||| ||| |||||| |
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| T |
8831036 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac |
8831116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 45094744 - 45094813
Alignment:
| Q |
281 |
actaccagcaagtaattaagaagcagtctatta--caaaaagcagcagccagtaatctttgcagacacaa |
348 |
Q |
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| T |
45094744 |
actaccagcaaggaattatgcagcagtctattaggcaaaaagcagcagccagtagactttgcagacacaa |
45094813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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