View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17084_low_13 (Length: 374)

Name: NF17084_low_13
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17084_low_13
NF17084_low_13
[»] chr1 (4 HSPs)
chr1 (49-359)||(43989880-43990190)
chr1 (289-341)||(33541854-33541906)
chr1 (287-342)||(41195339-41195394)
chr1 (287-327)||(44217295-44217335)
[»] chr6 (3 HSPs)
chr6 (288-331)||(9604741-9604784)
chr6 (287-327)||(6538387-6538427)
chr6 (287-341)||(35069432-35069486)
[»] chr7 (2 HSPs)
chr7 (287-341)||(38500064-38500118)
chr7 (287-327)||(45004636-45004676)
[»] chr3 (3 HSPs)
chr3 (287-360)||(29002960-29003030)
chr3 (288-341)||(30956772-30956825)
chr3 (288-341)||(30972584-30972637)
[»] chr8 (2 HSPs)
chr8 (291-359)||(9130441-9130506)
chr8 (287-341)||(40981000-40981054)
[»] chr5 (3 HSPs)
chr5 (287-341)||(9202884-9202938)
chr5 (288-341)||(24030548-24030601)
chr5 (288-328)||(32021968-32022008)
[»] chr2 (3 HSPs)
chr2 (287-337)||(5745560-5745610)
chr2 (287-341)||(15757812-15757866)
chr2 (287-341)||(41407171-41407225)
[»] chr4 (2 HSPs)
chr4 (288-341)||(44863098-44863151)
chr4 (285-341)||(27029-27085)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 49 - 359
Target Start/End: Original strand, 43989880 - 43990190
Alignment:
Q  49 taacatcacacacccaatttgctctccagctacaagatcaaatattgtcatattcaaattgagaccaaaccttatccagggtaaggaatcaaatatcatt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989880 taacatcacacacccaatttgctctccagctacaagatcaaatattgtcatattcaaattgagaccaaaccttatccagggtaaggaatcaaatatcatt 43989979  T
Q  149 ctttatctagatatttttaaccactatataatattaattaacctgttaaaaaagaaaacaattatgtaatattgctgtcaagcacataatccattgtcac 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989980 ctttatctagatatttttaaccactatataatattaattaacctgttaaaaaagaaaacaattatgtaatattgctgtcaagcacataatccattgtcac 43990079  T
Q  249 agtgattacatgtatgaagcaacacataaagaccgagtctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataataaacac 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990080 agtgattacatgtatgaagcaacacataaagaccgagtctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataataaacac 43990179  T
Q  349 ttatgtataag 359  Q
    |||||||||||    
T  43990180 ttatgtataag 43990190  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 33541906 - 33541854
Alignment:
Q  289 gtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||| | | |||||||||||||||||||||| |||| |||||||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataa 33541854  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 41195394 - 41195339
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataat 342  Q
    ||||||||||||||| | ||||||||| |||||||||||||| || || |||||||    
T  41195394 ctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataat 41195339  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 44217335 - 44217295
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagc 327  Q
    |||||||||||||| || ||||||||| |||||||||||||    
T  44217335 ctgtttggataaattgcatatttgcagcttatagcacaagc 44217295  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 9604741 - 9604784
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcgttt 331  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  9604741 tgtttggataaacagcttatttgcagtttatagcacaagcgttt 9604784  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 6538387 - 6538427
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagc 327  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  6538387 ctgtttggataaatagcttatttgcagcttatagcacaagc 6538427  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 35069432 - 35069486
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||| |||||| | | ||||||||| ||||||||||||||||| |||||||||    
T  35069432 ctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataa 35069486  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 38500118 - 38500064
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||| |||||| ||| |||||||||||||||||||||||| || |||||||||    
T  38500118 ctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataa 38500064  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 45004636 - 45004676
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagc 327  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  45004636 ctgtttggataaataacttatttgcagtttatagcacaagc 45004676  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 29003030 - 29002960
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataataaacacttatgtataagt 360  Q
    |||||||||||||||   ||||||||| |||||| | |||||||| |||||   ||||||||||||||||||||    
T  29003030 ctgtttggataaataatttatttgcagcttatagtaaaagcgtttatcatg---ataaacacttatgtataagt 29002960  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 30956825 - 30956772
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||||||||| ||| ||||||||| |||||||||||| | || |||||||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataa 30956772  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 30972637 - 30972584
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||||||||| ||| ||||||||| |||||||||||| | || |||||||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataa 30972584  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 9130506 - 9130441
Alignment:
Q  291 ttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataataaacacttatgtataag 359  Q
    ||||||||||||| ||||||||| ||||||||||||   | ||||| || |||| ||||||||||||||    
T  9130506 ttggataaatagcttatttgcagcttatagcacaag---tggtcatcatgataatcacttatgtataag 9130441  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 40981000 - 40981054
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||||| ||| ||||||||| |||||||||||||| || || ||||||    
T  40981000 ctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataa 40981054  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 9202938 - 9202884
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||||| | | ||||||||| |||||||||||| |||| |||||||||    
T  9202938 ctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataa 9202884  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 24030601 - 24030548
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||||||||| ||| ||||||||| |||||||||||||  || |||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataa 24030548  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 32021968 - 32022008
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcg 328  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  32021968 tgtttggataaatagattatttgcagattatagcacaagcg 32022008  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Complemental strand, 5745610 - 5745560
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatg 337  Q
    ||||||||||||| ||| ||||||||| ||||| ||||||||||| |||||    
T  5745610 ctgtttggataaagagcttatttgcagcttatatcacaagcgtttatcatg 5745560  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 15757866 - 15757812
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||||| ||| ||||| ||| |||||||||||||| || |||||||||    
T  15757866 ctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataa 15757812  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 41407171 - 41407225
Alignment:
Q  287 ctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||||| ||| | ||||||| |||||||||||||| || |||||||||    
T  41407171 ctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataa 41407225  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 44863151 - 44863098
Alignment:
Q  288 tgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    |||||||||||| | | ||||||||| |||||||||||||  ||||||||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataa 44863098  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 27085 - 27029
Alignment:
Q  285 gtctgtttggataaatagcgtatttgcagtttatagcacaagcgtttgtcatgataa 341  Q
    ||||||||||||||| | | | ||||||| |||||||||||||| || |||||||||    
T  27085 gtctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataa 27029  T

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