View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_low_15 (Length: 352)
Name: NF17084_low_15
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_15 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 47813545 - 47813268
Alignment:
| Q |
14 |
atatgaataagaggtattgacattgtacacttcacttttttgcacctttttcttcaaatgtgtatgccaaaagttcttcacttcattatctgttcgtcct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47813545 |
atatgaataagaggtattgacattgtacacttcacttttttgcacctttttcttcaaatgtgtatgccaaaagttcttcacttcattatctgttcgtcct |
47813446 |
T |
|
| Q |
114 |
ggtaatcttgctgcaattgcagaccatctgagcataaaggatcgctaataaattaattttcatcttgtatcaattagaggactaaattgatcaatcacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47813445 |
ggtaatcttgctgcaattgcagaccatctgagcataaaggatcgctaataaattaattttcatcttgtatcaattagaggactaaattgatcaatcacat |
47813346 |
T |
|
| Q |
214 |
tttatggtatgctacatgtagatagatatatgatatttagtccnnnnnnngatgtagaacttatatatctctataactagtt |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47813345 |
tttatggtatgctacatgta----gatatatgatatttagtccaaaaaaagatgtagaacttatatatctctataactagtt |
47813268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 38917387 - 38917343
Alignment:
| Q |
99 |
ttatctgttcgtcctggtaatcttgctgcaattgcagaccatctg |
143 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
38917387 |
ttatctgttcgtccgggtaatcttgctgcaatagttgaccatctg |
38917343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 10057 - 10014
Alignment:
| Q |
75 |
gtatgccaaaagttcttcacttcattatctgttcgtcctggtaa |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10057 |
gtatgccaatagttcttcacttcattatctgttcttccaggtaa |
10014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 42788767 - 42788805
Alignment:
| Q |
80 |
ccaaaagttcttcacttcattatctgttcgtcctggtaa |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
42788767 |
ccaaaagttcttcacctcattatctgttcttcctggtaa |
42788805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University