View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_18 (Length: 308)
Name: NF17084_low_18
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 11966394 - 11966146
Alignment:
| Q |
16 |
aatactcctgttcttctacctgatttgttgaaaaacacgccttccaatatagctagattggaagatgttattgaacaatctaaagctagacaaaagtatc |
115 |
Q |
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| T |
11966394 |
aatactcctgttcttcttcctgatttgttgaaaaacacgccttccaatatagctagattggaagatgttattgaacaatctaaagctagacaaaagtatc |
11966295 |
T |
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| Q |
116 |
tcgctcatactaacagttcttctgatggcggtgatgttcgttggtatttttgtaaaacctctttagcccctaatggtatctactaccatgtcttatcatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11966294 |
tcgctcatactaacagttcttctgatggcggtgatgttcgttggtatttttgtaaaacctctttagcccctaatggtat-------------gtatcatc |
11966208 |
T |
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| Q |
216 |
aatttctagtttttgttctattaatttactactttattagtatctaacccttttgattgatt |
277 |
Q |
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| T |
11966207 |
aatttctagtttttgttctattaatttactactttattagtatctatcccttttgattgatt |
11966146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 34453747 - 34453971
Alignment:
| Q |
16 |
aatactcctgttcttctacctgatttgttgaaaaacacgccttccaatatagctagattggaagatgttattgaacaatctaaagctagacaaaagtatc |
115 |
Q |
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| T |
34453747 |
aatactcctgttcttcttcctgatttgttgaaaaacacgccttccaatatagctagattgaaagatgttgttgaacaatctaaagctagacaaaagtatc |
34453846 |
T |
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| Q |
116 |
tcgctcatactaacagttcttctgatggcggtgatgttcgttggtatttttgtaaaacctctttagcccctaatggtatctactaccatgtcttatcatc |
215 |
Q |
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| T |
34453847 |
tcgctcatactaacagttcttctgatggcggtgatgttcgttggtatttttgtaagacctctttagcccataatggtatgtact---atgtcttatcatc |
34453943 |
T |
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| Q |
216 |
aatttctagtttttgttctattaattta |
243 |
Q |
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| T |
34453944 |
aatttgtagtttttgttgtattaattta |
34453971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 34453984 - 34454021
Alignment:
| Q |
240 |
tttactactttattagtatctaacccttttgattgatt |
277 |
Q |
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| T |
34453984 |
tttactactttattagtatgtatcccttttgattgatt |
34454021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 47724919 - 47724987
Alignment:
| Q |
16 |
aatactcctgttcttctacctgatttgttgaaaaacacgccttccaatatagctagattggaagatgtt |
84 |
Q |
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| T |
47724919 |
aatactcctgttcttcttcctgatttgttgaaaaacacgccttccaatatagctagattggaagatgtt |
47724987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 47731911 - 47731979
Alignment:
| Q |
16 |
aatactcctgttcttctacctgatttgttgaaaaacacgccttccaatatagctagattggaagatgtt |
84 |
Q |
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| T |
47731911 |
aatactcctgttcttcttcctgatttgttgaaaaacacgccttccaatatagctagattggaagatgtt |
47731979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 47724987 - 47725077
Alignment:
| Q |
150 |
tgttcgttggtatttttgtaaaacctctttagcccctaatggtatctactaccatgtcttatcatcaatttctagtttttgttctattaattta |
243 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | |||||||| |
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| T |
47724987 |
tgttcgttggtatttttgtaagacctctttagcccctaatggtatgtact---atgtcttatcatcaatttgtagtttttgttgtgttaattta |
47725077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 47731979 - 47732069
Alignment:
| Q |
150 |
tgttcgttggtatttttgtaaaacctctttagcccctaatggtatctactaccatgtcttatcatcaatttctagtttttgttctattaattta |
243 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| | |||||||| |
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| T |
47731979 |
tgttcgttggtatttttgtaagacctctttagcccctaatggtatgtact---atgtcttatcatcaatttgtagtttttgttgtgttaattta |
47732069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 47725090 - 47725141
Alignment:
| Q |
240 |
tttactactttattagtatctaacccttttgattgattgattaatatgttttgttc |
295 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
47725090 |
tttactactttattagtatgtatccctt----ttgattgattaatatgttttgttc |
47725141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 47732082 - 47732133
Alignment:
| Q |
240 |
tttactactttattagtatctaacccttttgattgattgattaatatgttttgttc |
295 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
47732082 |
tttactactttattagtatgtatccctt----ttgattgattaatatgttttgttc |
47732133 |
T |
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