View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_19 (Length: 301)
Name: NF17084_low_19
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 27838648 - 27838378
Alignment:
| Q |
18 |
tccaccaccgccataacctccacctccactcacaccaatgtcaccatggaaacctgcaccaatgccatgatctacaccaaaggtgaggagtgttctagcg |
117 |
Q |
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| T |
27838648 |
tccaccaccgccataacctccacctccactcacaccaatgtcaccatggaaacctgcaccaatgccatgatctacaccaaaggtgaggagtgttctagcg |
27838549 |
T |
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| Q |
118 |
gcagagcaaatacctaaacctaacaacacaaagnnnnnnntactaagaactttcgaaattgtcattatggaaaatgttgaaatgtcatatccttgagatg |
217 |
Q |
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| T |
27838548 |
gcagagcaaataccgaaacctaacaacacaaagaaaaaaataccaagaactttcgaaattgtcattatggaaaatgttgaaatgtcatatccttgagatg |
27838449 |
T |
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| Q |
218 |
ggtatttataggaatcaaattgggatgagattgtaaaagtgcgttttgtgctgtcccatgtagtagaagta |
288 |
Q |
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| T |
27838448 |
ggtatttataggaatcaaattgggatgagattgtaaaagtgcgttttgtgctgtcacatgtagtagaagta |
27838378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 27833068 - 27832903
Alignment:
| Q |
18 |
tccaccaccgccataacctccacctccactcacaccaatgtcaccatggaaacctgcaccaatgccatgatctacaccaaaggtgaggagtgttctagcg |
117 |
Q |
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||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27833068 |
tccaccacctccatgacctccaccaccactcacaccaatgtcaccatggtaacctgcaccaatgcgatgatctacaccaaaggtgaggagtgttctagca |
27832969 |
T |
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| Q |
118 |
gcagagcaaatacctaaacctaacaacacaaagnnnnnnntactaagaactttcgaaattgtcatt |
183 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
27832968 |
gcagagcaaatgccgaaacctaacaacacaaagaacaaaatactaagaactttcgaagttgccatt |
27832903 |
T |
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