View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17084_low_24 (Length: 278)

Name: NF17084_low_24
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17084_low_24
NF17084_low_24
[»] chr3 (13 HSPs)
chr3 (79-255)||(763242-763418)
chr3 (1-82)||(762904-762985)
chr3 (79-239)||(9584775-9584940)
chr3 (178-216)||(2442260-2442298)
chr3 (1-74)||(9599350-9599423)
chr3 (177-216)||(783590-783629)
chr3 (175-210)||(12218278-12218313)
chr3 (173-216)||(13526841-13526884)
chr3 (175-208)||(989634-989667)
chr3 (176-209)||(43992212-43992245)
chr3 (177-221)||(1438225-1438269)
chr3 (178-210)||(1930955-1930987)
chr3 (182-222)||(3746229-3746269)
[»] chr6 (2 HSPs)
chr6 (175-214)||(9825298-9825337)
chr6 (175-209)||(9819612-9819646)
[»] chr2 (1 HSPs)
chr2 (175-208)||(36577635-36577668)
[»] chr7 (1 HSPs)
chr7 (175-207)||(1077952-1077984)
[»] chr5 (1 HSPs)
chr5 (175-207)||(1427476-1427508)
[»] chr4 (1 HSPs)
chr4 (181-209)||(22671928-22671956)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 763242 - 763418
Alignment:
Q  79 taaggagaacaagcatgaaataaatgacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 178  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763242 taaggagaacaagcatgaaataaataacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 763341  T
Q  179 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763342 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgac 763418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 762904 - 762985
Alignment:
Q  1 ttgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataataattaag 82  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  762904 ttgaagaaagataaaagtgcagaatgatttagtggtgggggaaacacctgatatatgtgtagtagttaacataataattaag 762985  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 9584775 - 9584940
Alignment:
Q  79 taaggagaacaagcatgaaataaatgacattaataaaaggtaa-----cataagttctagttgaatctcgcgataagtgactgaccataacatctaacta 173  Q
    |||| ||||||||||| || ||||| ||| ||||||||| |||     |||||||| || | |||||||  |||||||||| ||||||||||||||| ||    
T  9584775 taagaagaacaagcataaactaaataacagtaataaaagctaagttaacataagttgtaatcgaatctccagataagtgacagaccataacatctaatta 9584874  T
Q  174 ataacattaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaat 239  Q
    | ||||| ||| |||||||||||| |||||||| ||||||||| ||||| |  || ||||||||||    
T  9584875 acaacatcaaggacaaggtgatatcaaactctcgacatagacttctggattaaaataaccattaat 9584940  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 2442298 - 2442260
Alignment:
Q  178 cattaagaacaaggtgatattaaactctcaacatagact 216  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2442298 cattaagaacaaggtgatattaaactctcaacagagact 2442260  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9599350 - 9599423
Alignment:
Q  1 ttgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataa 74  Q
    |||||||||||| |||   || ||||||||||||||||||||||||  ||||||| |||||| ||||| |||||    
T  9599350 ttgaagaaagattaaacctcataatgatttagtggagggggaaacatatgatatacgtgtagcagttagcataa 9599423  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 783590 - 783629
Alignment:
Q  177 acattaagaacaaggtgatattaaactctcaacatagact 216  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  783590 acattaagaacaaggtgatatcaaactctcaacgtagact 783629  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 12218313 - 12218278
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctcaaca 210  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12218313 taacattaagaacaaggtgatatcaaactctcaaca 12218278  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 13526884 - 13526841
Alignment:
Q  173 aataacattaagaacaaggtgatattaaactctcaacatagact 216  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||    
T  13526884 aataacgttaagaacaaggtgatatcaaactctcaacgtagact 13526841  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 989667 - 989634
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctcaa 208  Q
    ||||||||| ||||||||||||||||||||||||    
T  989667 taacattaaaaacaaggtgatattaaactctcaa 989634  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 43992245 - 43992212
Alignment:
Q  176 aacattaagaacaaggtgatattaaactctcaac 209  Q
    |||||||||||||||||||||| |||||||||||    
T  43992245 aacattaagaacaaggtgatatcaaactctcaac 43992212  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 1438269 - 1438225
Alignment:
Q  177 acattaagaacaaggtgatattaaactctcaacatagactgctgg 221  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||    
T  1438269 acattaaaaacaaggtgatatcaaactctcaacgtagacttctgg 1438225  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 1930955 - 1930987
Alignment:
Q  178 cattaagaacaaggtgatattaaactctcaaca 210  Q
    |||||||||||||||||||| ||||||||||||    
T  1930955 cattaagaacaaggtgatatcaaactctcaaca 1930987  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 3746269 - 3746229
Alignment:
Q  182 aagaacaaggtgatattaaactctcaacatagactgctgga 222  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  3746269 aagaacatggtgatattaaactctcaacacagacttctgga 3746229  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 9825298 - 9825337
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctcaacataga 214  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  9825298 taacattaagaacaaggcgatatcaaactctcaacataga 9825337  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 9819612 - 9819646
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctcaac 209  Q
    ||||||||||||||||||||||| |||||||||||    
T  9819612 taacattaagaacaaggtgatatcaaactctcaac 9819646  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 36577668 - 36577635
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctcaa 208  Q
    ||||||||||| ||||||||||||||||||||||    
T  36577668 taacattaagaccaaggtgatattaaactctcaa 36577635  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 1077952 - 1077984
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctca 207  Q
    |||||||||||||| ||||||||||||||||||    
T  1077952 taacattaagaacatggtgatattaaactctca 1077984  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 1427476 - 1427508
Alignment:
Q  175 taacattaagaacaaggtgatattaaactctca 207  Q
    ||||| |||||||||||||||||||||||||||    
T  1427476 taacaataagaacaaggtgatattaaactctca 1427508  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 22671928 - 22671956
Alignment:
Q  181 taagaacaaggtgatattaaactctcaac 209  Q
    |||||||||||||||||||||||||||||    
T  22671928 taagaacaaggtgatattaaactctcaac 22671956  T

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