View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_25 (Length: 267)
Name: NF17084_low_25
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 489165 - 488929
Alignment:
| Q |
12 |
aggagcagagaagagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
111 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489165 |
aggatcagaaaagagacagtccttagttgggagagcataggtttcacatctaaggatggtaccatcaggcaaagctagtttcttgagaaggtcaaaattg |
489066 |
T |
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| Q |
112 |
tgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
211 |
Q |
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| T |
489065 |
tgatttccaacagtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatccc |
488966 |
T |
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| Q |
212 |
aatctggttggatgaaatttcccatccataagctatt |
248 |
Q |
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| T |
488965 |
aatctggttggatgaaatttcccatccataagctatt |
488929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 34697039 - 34697145
Alignment:
| Q |
136 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttccca |
235 |
Q |
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| T |
34697039 |
taaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttccca |
34697138 |
T |
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| Q |
236 |
tccataa |
242 |
Q |
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||||||| |
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| T |
34697139 |
tccataa |
34697145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 245
Target Start/End: Original strand, 43637766 - 43637902
Alignment:
| Q |
109 |
ttgtgatttccaacggtgtcacttatgtaaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatat |
208 |
Q |
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| T |
43637766 |
ttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattggaacatgt |
43637865 |
T |
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| Q |
209 |
cccaatctggttggatgaaatttcccatccataagct |
245 |
Q |
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| T |
43637866 |
cccaatctggttgtataaaatttcccatccataagct |
43637902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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