View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_29 (Length: 248)
Name: NF17084_low_29
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4745739 - 4745970
Alignment:
| Q |
1 |
gttaagagttttcatgannnnnnnaccaccaaaccttctcagtaatttgtgcatctaattacactttagaacaaccaaatttttcataaaaacatgagtt |
100 |
Q |
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| T |
4745739 |
gttaagagttttcatgatttttttaccaccaaaccttctcagtaatttgtgcatctaattacactttagaacaaccaattttttcataaaaacatgagtt |
4745838 |
T |
|
| Q |
101 |
tcatggtaaatttttatcgtaacgtattatgctgaaatttaaggtatagtatattcctcatggcggtttgagcttattttccttagttcttagtttcatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4745839 |
tcatggtaaatttttatcgtaacgtattatgctgaaatttaaggtatagtatattcctcatggcgctttgagcttattttccttagttcttagtttcatg |
4745938 |
T |
|
| Q |
201 |
gtaaaatagagatgttggattcgagaatgctt |
232 |
Q |
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| T |
4745939 |
gtaaaatagagatgttggattcgagaatgctt |
4745970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 21157839 - 21157718
Alignment:
| Q |
31 |
aaaccttctcagtaatttgtgcatctaattacactttagaacaaccaaatttttcataaaaacatgagtttcatggtaaatttttatcgtaacgtattat |
130 |
Q |
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| T |
21157839 |
aaaccttttcagtagtttgtgcatctagttacactttaatacaaccaaatttttcatcaaaacattagtttcacggcaaatttttatcacaacgtattat |
21157740 |
T |
|
| Q |
131 |
gctgaaatttaaggtatagtat |
152 |
Q |
| |
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| T |
21157739 |
gatgaaatttaatgtatagtat |
21157718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 28240474 - 28240577
Alignment:
| Q |
59 |
ttacactttagaacaaccaaatttttcataaaaacatgagtttcatggtaaatttttatcgtaacgtattatgctgaaattt-aaggtatagtatattcc |
157 |
Q |
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|||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||| | || ||||| |||| |||||| ||||||| |||| |||| |
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| T |
28240474 |
ttacacattagaacaaccaaaattttcatcaaaacatgagttttatggtaaaattttaccacaatgtattgtgctaaaatttaaaggtatggtattttcc |
28240573 |
T |
|
| Q |
158 |
tcat |
161 |
Q |
| |
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|||| |
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| T |
28240574 |
tcat |
28240577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 28232951 - 28233002
Alignment:
| Q |
59 |
ttacactttagaacaaccaaatttttcataaaaacatgagtttcatggtaaa |
110 |
Q |
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| T |
28232951 |
ttacactttagaacaaccaaaattttcatcaaaacatgagttttatggtaaa |
28233002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 28332334 - 28332452
Alignment:
| Q |
43 |
taatttgtgcatctaattacactttagaacaaccaaatttttcataaaaacatgagtttcatggt-aaatttttatcgtaacgtattatgctgaaattta |
141 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||| ||||||||| || ||||| |||||| |||| | |||| ||||| |||||||| |
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| T |
28332334 |
taatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaacatgatatttatggtaaaatttgtatcatggcgtaatatgcggaaattta |
28332433 |
T |
|
| Q |
142 |
aggtatagtatattcctca |
160 |
Q |
| |
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|| |||||||| ||||||| |
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| T |
28332434 |
agttatagtattttcctca |
28332452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 28328267 - 28328380
Alignment:
| Q |
43 |
taatttgtgcatctaattacactttagaacaaccaaatttttcat---aaaaacatgagtttcatggt-aaatttttatcgtaacgtattatgctgaaat |
138 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||| |||||||||| || ||||| |||||| |||| || |||||||||| ||||| |
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| T |
28328267 |
taatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaaaaacatgatatttatggtcaaatttgtatcatagcgtattatgcggaaat |
28328366 |
T |
|
| Q |
139 |
ttaaggtatagtat |
152 |
Q |
| |
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||||| |||||||| |
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|
| T |
28328367 |
ttaagttatagtat |
28328380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 678897 - 678969
Alignment:
| Q |
50 |
tgcatctaattacactttagaacaaccaaatttttcataaaaacatgagtttcatggtaaatttttatcgtaac |
123 |
Q |
| |
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|||||||| ||||||||||||||||||||| || |||| ||| ||||||||| | ||| ||| |||||| |||| |
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| T |
678897 |
tgcatctatttacactttagaacaaccaaa-ttgtcattaaaccatgagttttaaggtgaatctttatcataac |
678969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 1638917 - 1639018
Alignment:
| Q |
46 |
tttgtgcatctaattacactttagaacaaccaaatttttcataaaaacatgagtttcatggtaaatttttatcgtaacgtattatgctgaaatttaaggt |
145 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||| ||||| | |||||||||||||| ||||||| ||||||||||| |||||||||| || |
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| T |
1638917 |
tttgtgcatctagttacactttaaaacaaccaaaattttcatcaaaacgttagtttcatggtaaa-ttttatcacaacgtattatgatgaaatttaatgt |
1639015 |
T |
|
| Q |
146 |
ata |
148 |
Q |
| |
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||| |
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|
| T |
1639016 |
ata |
1639018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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