View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_4 (Length: 595)
Name: NF17084_low_4
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_4 |
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| [»] scaffold0040 (2 HSPs) |
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Alignment Details
Target: scaffold0040 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 366 - 580
Target Start/End: Complemental strand, 3327 - 3113
Alignment:
| Q |
366 |
cagatcctctgacctctttgcttgagcttcctgaattgctctctattcttccttcattttagccagttgtcttctcaaggattcagatatcagcttctat |
465 |
Q |
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| T |
3327 |
cagatcctctgatctctgggattttgcttcctgaattgctttctgctcttctttcatttcagccaattgtctttttagagattcagaaatcagcttctga |
3228 |
T |
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| Q |
466 |
tcaaatagttcttcatgaagtttctcaactttcttttcttgtttagggtttttcatcttcatatccttaagaactggtttttgaagcttgacaaacactt |
565 |
Q |
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||| |||||||||| ||||||||||||| |||||| |||| || ||| | ||||||||| || ||||| |||||| ||| |||| ||||| ||| | || |
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| T |
3227 |
tcagatagttcttcctgaagtttctcaattttcttctcttcttcaggatctttcatctttatctccttgagaactagttcttgagacttgataaataatt |
3128 |
T |
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| Q |
566 |
gagttatccaagaag |
580 |
Q |
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| T |
3127 |
gagttatccaagaag |
3113 |
T |
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Target: scaffold0040; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 3412 - 3329
Alignment:
| Q |
8 |
tgagaagaaggttctcctaaattaattttaatgttaatttagtggg-tcagagcctaaatgtactatatcctactccccctttt |
90 |
Q |
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| T |
3412 |
tgagaagcaggttctcctaaattaattttaatgttaatttagtgggctcaatgcctaaatgtattgtatcttactccccctttt |
3329 |
T |
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Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 21317988 - 21318080
Alignment:
| Q |
8 |
tgagaagaaggttctcctaaattaattttaatgttaatttagtggg-tcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
21317988 |
tgagaaggaggttctcctaaattaattttaatgtaaatttagtgggctcatagtctaaatgtactatatcctactcccccttttatcatcaac |
21318080 |
T |
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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 23192031 - 23191940
Alignment:
| Q |
8 |
tgagaagaaggttctcctaaattaattttaatgttaatttagtggg-tcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
23192031 |
tgagaagaatgttctcctaaattaattttaactttaatttagtgggttcagagcctaaatgtactatatgttact-ccccttttgtcatcaac |
23191940 |
T |
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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 31126801 - 31126713
Alignment:
| Q |
8 |
tgagaagaaggttctcctaaattaattttaatgttaatttagtgg-gtcagagcctaaatgtactatatcctactcccccttttgtcat |
95 |
Q |
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| T |
31126801 |
tgagaagaaggttctcctaaattaattttaatcttaatttagtggactcagaatctaaatgtactataccccacacccccttttgtcat |
31126713 |
T |
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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 22996397 - 22996309
Alignment:
| Q |
8 |
tgagaagaaggttctcctaaattaattttaatgttaatttagtgg-gtcagagcctaaatg-tactatatcctactcccccttttgtca |
94 |
Q |
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| T |
22996397 |
tgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgttaatatgtcttactcccccttttgtca |
22996309 |
T |
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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 18516576 - 18516493
Alignment:
| Q |
16 |
aggttctcctaaattaattttaatgttaatttag-tgggtcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
18516576 |
aggttctcctaaattaattttaattctaatttagttggctcagagcctaaatgtattatat-ctacttccccttttgtcatcaac |
18516493 |
T |
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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 18361071 - 18360979
Alignment:
| Q |
8 |
tgagaagaaggttctcc-taaattaattttaatgttaatttagtggg-tcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
18361071 |
tgagaagaaagttctccctaaattagttttaattttaatttagtggacttagagcctaaatgtactatatcttact-ccccttttgtcatcaac |
18360979 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 14356635 - 14356553
Alignment:
| Q |
16 |
aggttctcctaaattaattttaatgttaatttagtgg-gtcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
14356635 |
aggttctcctaaattaattttaa-gttaatttagtggactcagaacctaaatgtactatgt-ctactccccattttgtcatcaac |
14356553 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 18776706 - 18776786
Alignment:
| Q |
18 |
gttctcctaaattaattttaatgttaatttagtggg-tcagagcctaaatgtactatatcctactcccccttttgtcatcaac |
99 |
Q |
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| T |
18776706 |
gttctcctaaattaattttaa-gttaatttagtgggcttacaacctaaatgtattatat-ctactctcccttttgtcatcaac |
18776786 |
T |
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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 13892502 - 13892571
Alignment:
| Q |
29 |
ttaattttaatgttaatttagtgg-gtcagagcctaaatgtactatatcctactcccccttttgtcatcaa |
98 |
Q |
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| T |
13892502 |
ttaattttaattttaatttagtggactcagggcctaaatgtactatat-ctactccccattttgtaatcaa |
13892571 |
T |
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