View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17084_low_6 (Length: 500)
Name: NF17084_low_6
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_6 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 482
Target Start/End: Complemental strand, 24220 - 23748
Alignment:
| Q |
10 |
tccaagaatatattgctggtggtagacaatgaaataattgcattaggatgtactatcaggaaaaagttatataaataattaaacatttattacacttcat |
109 |
Q |
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| T |
24220 |
tccaaaaatatattgctggtggtagacaatgaaataattgcattaggatgtaatatggggaaaaagttataaaaataattaagcatttattacacttcat |
24121 |
T |
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| Q |
110 |
ataaagttcaacaaaatagttgtcttttataatgaaaaatcacattctccatgttactttatgtatcttatatcgtttgagggaattccgctagataatt |
209 |
Q |
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| T |
24120 |
ataaatttcaacaaaatagttgtcttttataatgaaaaatcacattctccatgttactttatgtatcttatatcgtttgagggaattccgccagataatt |
24021 |
T |
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| Q |
210 |
ttgtaaattgacttcttttcttgtggttttacattgaagagaacagtagctgaatcacactatttgtaaatcttattacttgaatttcagactgaaggaa |
309 |
Q |
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| T |
24020 |
ttgtaaattgacttcttttcttgtggttttacattgaagagaacagtagctgaatcacactatttgtaaatcttattacttgaatttcagactgaaggaa |
23921 |
T |
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| Q |
310 |
agattaggaagtgaaccttccgatgatcaagttgcaacttcgttgaagatttctcgagctgatctacgagctaaaataatagagtgctctttagcaagag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23920 |
agattaggaagtgaaccttccgatgatcaagttgcaacttcgttgaagatttctcgagctgatctacgagctaaaataatagagtgctctttagcaagag |
23821 |
T |
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| Q |
410 |
aaaagttaactatgagcaatgttcgcttagttttgtccattgctcaaagatatgataatatgggtgctgaaat |
482 |
Q |
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| T |
23820 |
aaaagttaactatgagcaatgttcgcttagttttgtcgattgctcaaagatatgataatatgggtgctgaaat |
23748 |
T |
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