View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17084_low_9 (Length: 458)
Name: NF17084_low_9
Description: NF17084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17084_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 275 - 441
Target Start/End: Complemental strand, 30373408 - 30373245
Alignment:
| Q |
275 |
tgattatctagtaagtgatcgaaaatattacattttgatacgtgccgacatatgaaaacgaacacaaaaataatagcagaagacataatagcagatttgg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30373408 |
tgattatctagtaagtgatcgaaaatattacattttgataagtgccgacatatgaaaacgaacacaaaaataatagcagaagacataatagcagatttgg |
30373309 |
T |
|
| Q |
375 |
taaataaagtccacattgtcaagaatttaatatgaggtgccaaaagaacctctccaaatctgaatat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
30373308 |
taaataaagtccacattgtcaagaatttaatatgagatgccaaaagaa---ctccaaatctgaatat |
30373245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 30373679 - 30373541
Alignment:
| Q |
10 |
attattcttcaacggttttcatgttatagcttttctcgtcatgttatatattttattttatttttctagttggaaatataatatagttaatacatatgga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30373679 |
attattcttcaacggttttcatgttatagcttttctcgtcatgttatatattttattttatttttctagttggaaatataatatagttaatacatatgga |
30373580 |
T |
|
| Q |
110 |
aattagtctaatttaacaaaacacaaatgatgtatcctc |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30373579 |
aattagtctaatttaacaaaacacaaatgatgtatcctc |
30373541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University