View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17085_high_1 (Length: 325)

Name: NF17085_high_1
Description: NF17085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17085_high_1
NF17085_high_1
[»] chr5 (27 HSPs)
chr5 (1-311)||(38816628-38816931)
chr5 (135-210)||(19820428-19820503)
chr5 (161-290)||(22423764-22423895)
chr5 (135-202)||(22013364-22013431)
chr5 (135-209)||(42469171-42469245)
chr5 (174-258)||(3966492-3966577)
chr5 (174-207)||(6035472-6035505)
chr5 (243-292)||(8420075-8420124)
chr5 (160-209)||(15410483-15410532)
chr5 (135-202)||(2436878-2436939)
chr5 (157-209)||(6326332-6326384)
chr5 (238-290)||(9929668-9929720)
chr5 (174-210)||(17123037-17123073)
chr5 (174-210)||(27144452-27144488)
chr5 (174-258)||(11685928-11686012)
chr5 (150-208)||(15382442-15382500)
chr5 (262-292)||(24906250-24906280)
chr5 (179-209)||(27932229-27932259)
chr5 (176-210)||(28588708-28588742)
chr5 (157-210)||(21191090-21191143)
chr5 (183-212)||(32766975-32767004)
chr5 (174-210)||(14674258-14674294)
chr5 (174-210)||(19579690-19579726)
chr5 (157-201)||(21522722-21522766)
chr5 (157-201)||(21533288-21533332)
chr5 (174-210)||(31084312-31084348)
chr5 (174-258)||(41995460-41995543)
[»] chr7 (31 HSPs)
chr7 (135-209)||(27944991-27945065)
chr7 (178-260)||(29787354-29787435)
chr7 (174-258)||(32308109-32308194)
chr7 (178-241)||(19206043-19206107)
chr7 (135-209)||(24105629-24105702)
chr7 (180-290)||(11700798-11700909)
chr7 (157-210)||(11722132-11722185)
chr7 (148-258)||(24339605-24339716)
chr7 (174-241)||(22484014-22484082)
chr7 (179-253)||(30731031-30731104)
chr7 (177-250)||(11072290-11072362)
chr7 (150-210)||(1433419-1433479)
chr7 (130-290)||(7328639-7328805)
chr7 (174-210)||(20549780-20549816)
chr7 (174-210)||(23191885-23191921)
chr7 (135-206)||(2034392-2034462)
chr7 (159-210)||(2425767-2425818)
chr7 (174-258)||(6630897-6630982)
chr7 (178-209)||(28155563-28155594)
chr7 (135-210)||(43027503-43027578)
chr7 (150-209)||(43249958-43250017)
chr7 (168-210)||(8046061-8046103)
chr7 (192-258)||(9933282-9933347)
chr7 (160-210)||(26733279-26733329)
chr7 (173-210)||(2948671-2948708)
chr7 (262-291)||(17852091-17852120)
chr7 (174-207)||(25791642-25791675)
chr7 (175-208)||(49107811-49107844)
chr7 (262-290)||(15680900-15680928)
chr7 (174-210)||(21828439-21828475)
chr7 (174-210)||(22868031-22868067)
[»] chr6 (39 HSPs)
chr6 (157-258)||(10294079-10294181)
chr6 (150-210)||(9027143-9027203)
chr6 (135-210)||(853893-853968)
chr6 (150-258)||(16766662-16766771)
chr6 (177-290)||(8805524-8805639)
chr6 (173-210)||(19040340-19040377)
chr6 (150-210)||(5000660-5000720)
chr6 (174-290)||(5732474-5732580)
chr6 (135-203)||(8365560-8365628)
chr6 (137-209)||(12696277-12696348)
chr6 (150-258)||(9107355-9107464)
chr6 (159-210)||(9629357-9629408)
chr6 (135-210)||(30866178-30866253)
chr6 (135-209)||(6389693-6389767)
chr6 (160-210)||(9658854-9658904)
chr6 (176-210)||(20371144-20371178)
chr6 (135-203)||(3398569-3398637)
chr6 (174-210)||(7265627-7265663)
chr6 (150-210)||(7938081-7938141)
chr6 (161-209)||(13851712-13851760)
chr6 (243-290)||(426478-426525)
chr6 (150-209)||(7977865-7977924)
chr6 (262-292)||(34073276-34073306)
chr6 (150-253)||(34073337-34073441)
chr6 (157-210)||(426548-426601)
chr6 (249-290)||(2117134-2117175)
chr6 (177-210)||(10842524-10842557)
chr6 (174-210)||(677826-677862)
chr6 (174-210)||(7996412-7996448)
chr6 (174-210)||(8022353-8022389)
chr6 (158-210)||(8777007-8777059)
chr6 (174-210)||(10339160-10339196)
chr6 (174-210)||(17341698-17341734)
chr6 (174-210)||(17841623-17841659)
chr6 (177-209)||(21395342-21395374)
chr6 (174-210)||(21424836-21424872)
chr6 (177-254)||(26562681-26562759)
chr6 (174-258)||(34290064-34290147)
chr6 (150-210)||(34595099-34595159)
[»] chr8 (15 HSPs)
chr8 (157-258)||(22651948-22652050)
chr8 (152-258)||(29510289-29510396)
chr8 (135-203)||(25192388-25192456)
chr8 (144-210)||(926822-926888)
chr8 (157-210)||(27213519-27213572)
chr8 (177-210)||(39954313-39954346)
chr8 (135-203)||(126390-126457)
chr8 (174-210)||(31109552-31109588)
chr8 (135-210)||(13436998-13437073)
chr8 (148-210)||(24362236-24362298)
chr8 (176-210)||(27101506-27101540)
chr8 (177-210)||(13844630-13844663)
chr8 (177-210)||(31236611-31236644)
chr8 (177-210)||(34897077-34897110)
chr8 (174-243)||(37283812-37283880)
[»] chr2 (26 HSPs)
chr2 (135-246)||(21782817-21782927)
chr2 (135-199)||(33519736-33519800)
chr2 (135-210)||(20539708-20539783)
chr2 (150-241)||(4332891-4332981)
chr2 (183-241)||(1327976-1328033)
chr2 (160-210)||(21616737-21616787)
chr2 (135-208)||(19536434-19536507)
chr2 (134-207)||(23717976-23718048)
chr2 (134-207)||(24105648-24105720)
chr2 (177-290)||(19573970-19574078)
chr2 (185-258)||(44860320-44860394)
chr2 (243-290)||(19536361-19536408)
chr2 (175-210)||(37411278-37411313)
chr2 (136-210)||(38117193-38117261)
chr2 (243-289)||(18255945-18255991)
chr2 (173-260)||(18420417-18420505)
chr2 (243-289)||(34691770-34691816)
chr2 (243-289)||(34714182-34714228)
chr2 (160-258)||(36409614-36409711)
chr2 (182-235)||(18276518-18276570)
chr2 (136-201)||(21624217-21624282)
chr2 (174-210)||(896200-896236)
chr2 (174-210)||(31018579-31018615)
chr2 (178-210)||(31284041-31284073)
chr2 (254-290)||(42511322-42511358)
chr2 (177-209)||(42832311-42832343)
[»] scaffold0306 (1 HSPs)
scaffold0306 (134-210)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (135-290)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (134-210)||(21902-21978)
[»] chr1 (33 HSPs)
chr1 (158-210)||(6427323-6427375)
chr1 (150-210)||(40917716-40917776)
chr1 (151-210)||(398799-398858)
chr1 (237-290)||(48547938-48547991)
chr1 (174-210)||(2896155-2896191)
chr1 (143-289)||(10572535-10572690)
chr1 (174-210)||(17831565-17831601)
chr1 (174-210)||(36878450-36878486)
chr1 (134-209)||(5376535-5376609)
chr1 (135-210)||(5927374-5927449)
chr1 (189-292)||(44482234-44482343)
chr1 (166-210)||(12443494-12443538)
chr1 (174-210)||(19562655-19562691)
chr1 (174-209)||(609493-609528)
chr1 (157-249)||(1486703-1486796)
chr1 (135-210)||(31014993-31015068)
chr1 (178-250)||(38503313-38503386)
chr1 (148-203)||(48040503-48040558)
chr1 (177-235)||(1262876-1262933)
chr1 (174-208)||(3490426-3490460)
chr1 (160-210)||(9709795-9709845)
chr1 (176-210)||(10475011-10475045)
chr1 (160-210)||(34298411-34298461)
chr1 (135-209)||(39130802-39130876)
chr1 (174-212)||(40285686-40285724)
chr1 (157-210)||(20157384-20157437)
chr1 (177-210)||(21530681-21530714)
chr1 (180-258)||(25361881-25361960)
chr1 (180-209)||(41877505-41877534)
chr1 (174-210)||(6415035-6415071)
chr1 (177-258)||(9828036-9828118)
chr1 (177-241)||(25452152-25452215)
chr1 (174-210)||(46348417-46348453)
[»] chr3 (30 HSPs)
chr3 (176-260)||(8039818-8039903)
chr3 (135-210)||(8383207-8383282)
chr3 (148-247)||(5441029-5441128)
chr3 (150-209)||(24205076-24205135)
chr3 (135-201)||(8842280-8842346)
chr3 (166-231)||(5407261-5407325)
chr3 (150-210)||(28917966-28918026)
chr3 (150-209)||(4991002-4991061)
chr3 (174-209)||(9800029-9800064)
chr3 (144-203)||(10335327-10335386)
chr3 (135-258)||(25064859-25064981)
chr3 (135-210)||(55401025-55401100)
chr3 (254-292)||(4466538-4466576)
chr3 (262-292)||(5440965-5440995)
chr3 (136-210)||(8587055-8587129)
chr3 (254-292)||(13807237-13807275)
chr3 (136-210)||(32429414-32429488)
chr3 (178-231)||(34307794-34307846)
chr3 (174-210)||(2620087-2620123)
chr3 (174-210)||(4987325-4987361)
chr3 (174-210)||(6525714-6525750)
chr3 (136-208)||(14618732-14618804)
chr3 (150-210)||(15796328-15796388)
chr3 (174-210)||(21479107-21479143)
chr3 (174-206)||(21720753-21720785)
chr3 (177-209)||(25074781-25074813)
chr3 (174-210)||(26290360-26290396)
chr3 (158-210)||(26492239-26492291)
chr3 (254-290)||(27505334-27505370)
chr3 (174-210)||(40052321-40052357)
[»] scaffold0168 (3 HSPs)
scaffold0168 (144-290)||(21002-21149)
scaffold0168 (229-290)||(21217-21278)
scaffold0168 (229-290)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (150-210)||(8763-8823)
[»] scaffold0044 (1 HSPs)
scaffold0044 (175-260)||(53170-53256)
[»] scaffold0007 (1 HSPs)
scaffold0007 (150-209)||(225303-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (174-209)||(92796-92831)
[»] scaffold0003 (1 HSPs)
scaffold0003 (150-258)||(241559-241668)
[»] chr4 (12 HSPs)
chr4 (174-209)||(35723420-35723455)
chr4 (174-208)||(17345451-17345485)
chr4 (150-210)||(23293020-23293080)
chr4 (187-258)||(30982863-30982935)
chr4 (176-210)||(40613441-40613475)
chr4 (152-209)||(847918-847975)
chr4 (157-210)||(36635296-36635349)
chr4 (178-210)||(1747205-1747237)
chr4 (135-210)||(5775392-5775469)
chr4 (177-209)||(7012058-7012090)
chr4 (246-290)||(18844423-18844467)
chr4 (254-290)||(28470448-28470484)
[»] scaffold0018 (2 HSPs)
scaffold0018 (138-210)||(178853-178925)
scaffold0018 (174-209)||(192284-192319)
[»] scaffold0697 (1 HSPs)
scaffold0697 (177-210)||(1636-1669)
[»] scaffold0279 (1 HSPs)
scaffold0279 (178-211)||(17903-17936)
[»] scaffold0652 (1 HSPs)
scaffold0652 (150-210)||(496-556)
[»] scaffold0450 (1 HSPs)
scaffold0450 (262-290)||(8564-8592)
[»] scaffold0110 (1 HSPs)
scaffold0110 (178-247)||(28843-28913)
[»] scaffold0103 (1 HSPs)
scaffold0103 (174-210)||(51800-51836)
[»] scaffold0027 (1 HSPs)
scaffold0027 (244-292)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 38816931 - 38816628
Alignment:
Q  1 aacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38816931 aacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataatt 38816832  T
Q  101 tgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||||||||||||||||||||||||    
T  38816831 tgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactcc-------gcacggatactgacacgccgacaccgctaataatt 38816739  T
Q  201 tgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcgt 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38816738 tgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgt 38816639  T
Q  301 gaatcgtgata 311  Q
    |||||||||||    
T  38816638 gaatcgtgata 38816628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||| ||||||||||||||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  161 acacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtc-ggac 257  Q
    ||||| ||||| ||||||||| | |||||  ||||||||||||||||||| | ||| |||| ||||||  ||| ||||||||| ||||||||||| ||||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  258 atggctaattcgaggagtgtccgtgcttcatag 290  Q
    | | ||||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttg 202  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||||||||||| ||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||| | |||||| ||| ||||| ||||| || |||||||||||||| | |||||||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 3966492 - 3966577
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||| ||||||||||||||||||||||||||||| | | | |||| | ||||  ||||||||||||| ||||| ||||||||||    
T  3966492 actgacatgccgacaccgctaataatttgagaaaatcac-acaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggaca 3966577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 6035472 - 6035505
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaa 207  Q
    ||||||||||||||||||||||||||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 15410532 - 15410483
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| |||||  |||||||||||||||||||||||||||| |||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaat 15410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 2436878 - 2436939
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttg 202  Q
    |||||||||||| |||||||| ||||||||| |||      |||||||||||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgacac------tgacacgccgacaccgctaataatttg 2436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 6326384 - 6326332
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||| |||||  ||||||||||||||| ||||| ||||||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaat 6326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  238 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 17123037 - 17123073
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaaaatc 17123073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 27144452 - 27144488
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27144452 actgacacgccgacaccgctaataatttgaggaaatc 27144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 11685928 - 11686012
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||| |||||||||||||||||||||||||| |||| ||| || | | ||||  ||||||||||||| || |||||||||||||    
T  11685928 actgacatgccgacaccgctaataatttgagaaagtcgc-ataatttagtgtaattatatgtgtcggtgtcgt-tcggtgtcggaca 11686012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 15382442 - 15382500
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaa 208  Q
    |||||| ||||||||| |||||  | |||||||||||||| ||||||||||||| ||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 209
Target Start/End: Original strand, 27932229 - 27932259
Alignment:
Q  179 cacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||||||||||||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaat 27932259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 28588742 - 28588708
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatc 28588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 21191143 - 21191090
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| |||||  ||||||| |||||||| ||||||||||||| ||||||    
T  21191143 ccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 32767004 - 32766975
Alignment:
Q  183 ccgacaccgctaataatttgagaaaatcgc 212  Q
    ||||||||||||||||||||||||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgc 32766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 14674258 - 14674294
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  14674258 actgacacgccgacacagctaataatttgaaaaaatc 14674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 19579690 - 19579726
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  19579690 actgatacgccgacacagctaataatttgagaaaatc 19579726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 21522722 - 21522766
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataattt 201  Q
    ||||||||| |||||  |||||||||||||||| |||||||||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 21533288 - 21533332
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataattt 201  Q
    ||||||||| |||||  |||||||||||||||| |||||||||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 31084312 - 31084348
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  31084312 actgacacgccgacacagctaataatttgaaaaaatc 31084348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 41995460 - 41995543
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||||||||||||  ||||||||| || |||||| | ||| |||| | |||||| |||||||||  || |||||||||||||    
T  41995460 actgacacgccgacacaactaataattcgaaaaaatcac-ataattcaatgtaattaagtgtcggtgccgtatcggtgtcggaca 41995543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||| |||||||| ||||||||| |||||  ||||||||||||||||| ||||||||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 29787435 - 29787354
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatg 260  Q
    ||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||||| |||||  ||||||||| |||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgttggacatg 29787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 32308109 - 32308194
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||| | ||||  |||||||| |||| |||||||||| |||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggaca 32308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 19206043 - 19206107
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 241  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||| ||||||| | |||||||| |||||  |||||||||||||||| ||||||||||||| |||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 11700798 - 11700909
Alignment:
Q  180 acgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgt 277  Q
    |||| ||||||| ||||||||||| |||||| | ||| |||| | |||||||||||| |||| || ||||||||||  ||| ||||||| ||||||||||    
T  11700798 acgctgacaccgttaataatttgacaaaatcac-ataattcaatgtaattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgt 11700896  T
Q  278 ccgtgcttcatag 290  Q
    || || |||||||    
T  11700897 ccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| |||||  |||||||||||||||||||||| ||||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 24339605 - 24339716
Alignment:
Q  148 atacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtg 245  Q
    |||||||| ||||||||| || ||  | |||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  246 tcggtgtcggaca 258  Q
    |||||||||||||    
T  24339704 tcggtgtcggaca 24339716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 22484014 - 22484082
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 241  Q
    |||||||||||||||||||||||||||| ||||||| || ||| |||| ||||||  |||||||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgc-ataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 30731031 - 30731104
Alignment:
Q  179 cacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtc 253  Q
    |||||||||||||| ||||||||||||||||| | ||| |||| | ||||| ||||||||||| |||| ||||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcac-ataattcagtgtaattgtgtgtcggtgtcgtgttggtgtc 30731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 11072290 - 11072362
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt 250  Q
    ||||||||||||||| ||||||||||| ||||    |||| |||| ||||||||||||||||||| ||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaata-tataattcaatataattatgtgtcggtgtcgtgtcggt 11072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 1433419 - 1433479
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||| ||||| |||||  | |||||||||||||||| ||||||||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatc 1433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 7328805 - 7328639
Alignment:
Q  130 atatactatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat- 228  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| |  | | ||||| ||| || |||||||||||||||||||  | ||| || | | ||||     
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataac-ataatttagtgtaatt 7328707  T
Q  229 -tatgtgtcggtgtggtgtc-----ggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
     ||||||||||||| |||||     ||||||||||| | ||||| ||| |||||| ||||||||||||    
T  7328706 atatgtgtcggtgtcgtgtcgtgttggtgtcggacacgcctaatccgatgagtgttcgtgcttcatag 7328639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 20549780 - 20549816
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||| ||||||||||||||||||||||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatc 20549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 23191885 - 23191921
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||| |||||||||||||||||||||||||||||||    
T  23191885 actgatacgccgacaccgctaataatttgagaaaatc 23191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaa 206  Q
    |||||||||||| ||||||| | | |||||| ||||| |||| ||||| ||||||| |||||||||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 2425818 - 2425767
Alignment:
Q  159 ggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatc 2425767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 6630982 - 6630897
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||||||||||||| |||||||||||||||| || || || |||| | ||||  ||||||||| ||| |||| |||||||||||    
T  6630982 actgacacgccgacaccactaataatttgagaaagtcact-taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggaca 6630897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 28155563 - 28155594
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||||||||||||||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaat 28155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 43027578 - 43027503
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| || ||||| | ||||||| |||||  ||||||||| |||| | ||||||||||||| ||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatc 43027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 43249958 - 43250017
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| ||||||| | |||||  |||||||||||||||| | |||||||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaat 43250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 8046103 - 8046061
Alignment:
Q  168 acggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaaaatc 8046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 9933282 - 9933347
Alignment:
Q  192 ctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    |||||||||||| |||||| | |||||||| || | ||||||||| |||| ||||||||||||||||    
T  9933282 ctaataatttgaaaaaatcac-atatttcagtaaacttatgtgtcagtgtcgtgtcggtgtcggaca 9933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 26733279 - 26733329
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||  ||||||||| |||||||||||||||||||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatc 26733329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 2948671 - 2948708
Alignment:
Q  173 tactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  2948671 tactgacacgccgacaccgctgataattttagaaaatc 2948708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagt 291  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 25791642 - 25791675
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaa 207  Q
    ||||||||||||||||||||||| ||||||||||    
T  25791642 actgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 49107811 - 49107844
Alignment:
Q  175 ctgacacgccgacaccgctaataatttgagaaaa 208  Q
    ||||||| ||||||||||||||||||||||||||    
T  49107811 ctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21828475 - 21828439
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||| || |||||||||||||||    
T  21828475 actgacacgccgacaccgttagtaatttgagaaaatc 21828439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 22868031 - 22868067
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  22868031 actgacacgccgacaccactaataatatgagaaaatc 22868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 10294079 - 10294181
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 254  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  255 gaca 258  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 9027143 - 9027203
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatc 9027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| |||| |||||||| ||||||||| ||||| | |||||||||||||||  |||||||||||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 16766662 - 16766771
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 247  Q
    |||||| ||||||||| || ||  |||||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T
Q  248 ggtgtcggaca 258  Q
    |||||||||||    
T  16766761 ggtgtcggaca 16766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 8805639 - 8805524
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgagga 273  Q
    |||||| || ||| |||||||||||||||||||| | ||| || | | ||||||||||||||||| ||||| |    || ||||||| ||||| ||||||    
T  8805639 gacacgtcggcactgctaataatttgagaaaatcac-ataatttagtgtaattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgagga 8805541  T
Q  274 gtgtccgtgcttcatag 290  Q
    |||||||||||||||||    
T  8805540 gtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 19040340 - 19040377
Alignment:
Q  173 tactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19040340 tactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||| | ||||| |||||||||| ||||||||||||||||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 5732580 - 5732474
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgagga 273  Q
    |||||||||||||||||| |||||||||||||||||| | |||||| | | ||||||| |         |||||||||||||||| | ||||| ||||||    
T  5732580 actgacacgccgacaccgttaataatttgagaaaatcac-atattttagtgtaattatat---------gtgtcggtgtcggacacgcctaatccgagga 5732491  T
Q  274 gtgtccgtgcttcatag 290  Q
    |||||| ||||||||||    
T  5732490 gtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    |||||||||||| |||||||| || |||||| |||||  ||||||||||||||||  ||||||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 12696277 - 12696348
Alignment:
Q  137 atgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||| |||||||| | ||||||| |||||  |||||||||||||||| ||||||||||||| |||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 12696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 9107464 - 9107355
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 247  Q
    |||||| ||||||||| |||||  ||| |||||||||||| ||||||||||||| |||||| | | | |||| | |||||  | |||||||||| |||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtgtaattacaagtgtcggtgtcgtgtc 9107366  T
Q  248 ggtgtcggaca 258  Q
    |||||||||||    
T  9107365 ggtgtcggaca 9107355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 9629357 - 9629408
Alignment:
Q  159 ggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatc 9629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||| |||||||||||| ||||||| | ||| |  || ||||| || |||||||||||||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 6389693 - 6389767
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||| | || ||| ||||||||| |||||  ||| |||||||||||| | |||||||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9658854 - 9658904
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||  |||||||||||||||||||||||||||| ||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatc 9658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 20371178 - 20371144
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||    
T  20371178 tgacacgccgacaccgctaataatttgagaaaatc 20371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    |||||||||| | ||||||||  || ||||| |||||  |||||||||||||||| |||||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 7265663 - 7265627
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7265663 actgacacgccaacaccgctaataatttgagaaaatc 7265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| || ||  |||||||||||||||| ||||||||||||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 13851712 - 13851760
Alignment:
Q  161 acacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||| |||||  ||||||||| ||||||||||||||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 7977924 - 7977865
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| | ||||||| || || ||||||||||||||||| ||||||||||||| |||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaat 7977865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 34073441 - 34073337
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 247  Q
    |||||| | ||||||| |||||  ||||||| ||| ||| ||||||||||||||||||||| | ||| |||| | ||||  |||| |||||||| |||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctc-ataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  248 ggtgtc 253  Q
    ||||||    
T  34073342 ggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 426601 - 426548
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| |||||  |||||||||||||||| | ||||||||||| ||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  249 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 10842524 - 10842557
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||||||||| ||||||    
T  10842524 gacacgccgacaccgctaataatttgaaaaaatc 10842557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 677826 - 677862
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| | ||||||||||||||||||    
T  677826 actgacacgccgacactgttaataatttgagaaaatc 677862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 7996448 - 7996412
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  7996448 actgacatgccgacactgctaataatttgagaaaatc 7996412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 8022353 - 8022389
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  8022353 actgacatgccgacactgctaataatttgagaaaatc 8022389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 8777059 - 8777007
Alignment:
Q  158 cggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||| |||||  ||||||||||||||||  |||||||||||| ||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 8777007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 10339196 - 10339160
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10339196 actgacacgccgacaccgcgattaatttgagaaaatc 10339160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 17341734 - 17341698
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  17341734 actgacacgccgacaccgttaataatttgataaaatc 17341698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 17841659 - 17841623
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  17841659 actgacacgccgacacagctaataatttgaaaaaatc 17841623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 21395374 - 21395342
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||| ||||||||||||||||||||||||    
T  21395374 gacacgccaacaccgctaataatttgagaaaat 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 21424872 - 21424836
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  21424872 actgacacgccaacaccgctaataatttgaaaaaatc 21424836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 26562681 - 26562759
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcg 254  Q
    ||||||||||||| ||||| |||||||||||||| | ||| |||| | ||||  ||||||||| ||| ||||||||||||    
T  26562681 gacacgccgacactgctaaaaatttgagaaaatcac-ataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcg 26562759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 34290147 - 34290064
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||| ||||||||  ||||||||||| || |||| | ||| |||| | ||||||||||||||||| ||||| ||||| ||||    
T  34290147 actgacatgccgacacaactaataatttgcgagaatcac-ataattcagtgtaattatgtgtcggtgtcgtgtcagtgtccgaca 34290064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 34595099 - 34595159
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| |||||  | ||||||||||||||  |||||||||||| ||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatc 34595159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 22651948 - 22652050
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgtcg 254  Q
    ||||||||| |||||  |||||||||||||||| ||||||||||||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgtcg 22652046  T
Q  255 gaca 258  Q
    ||||    
T  22652047 gaca 22652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 29510396 - 29510289
Alignment:
Q  152 ggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 249  Q
    |||| ||||||||| |||||  |||||||||||||||| ||||||||||||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  250 tgtcggaca 258  Q
    |||||||||    
T  29510297 tgtcggaca 29510289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    |||||||||||||||||||||  ||||||||  ||||  |||||||||||||||| |||||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  144 acgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||| |||||| ||||||||| |||||  ||||||||||| ||||  |||||||||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 27213519 - 27213572
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| ||||| ||| ||||||||||||| ||||||||||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaaaatc 27213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 39954346 - 39954313
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatc 39954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    |||||||||||| ||||| || | |||||||  |||| |||||||||||| ||||||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 31109588 - 31109552
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||| ||||||||||||||||||    
T  31109588 actgacacgccgacaccgttaataatttgagaaaatc 31109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 13437073 - 13436998
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| | | |||| ||||||| | || ||  |||||||||||||||| ||||||||||||| ||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatc 13436998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 24362298 - 24362236
Alignment:
Q  148 atacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||| ||||| ||| ||| |  || ||||||||||||||||||||||||||||| ||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatc 24362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 27101506 - 27101540
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||||||||| ||||||    
T  27101506 tgacacgccgacaccgctaataatttgaaaaaatc 27101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 13844663 - 13844630
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||| ||||||||||||||||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatc 13844630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 31236644 - 31236611
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||| ||||||||||||||||||||    
T  31236644 gacacgccgacactgctaataatttgagaaaatc 31236611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 34897077 - 34897110
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||||||||||||||||||||||||    
T  34897077 gacacgtcgacaccgctaataatttgagaaaatc 34897110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 37283880 - 37283812
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtgg 243  Q
    ||||||| || | ||||||||||||| |||||||||| | ||| |||| | |||||||||||||||||||    
T  37283880 actgacatgcgggcaccgctaataatctgagaaaatcac-ataattcagtgtaattatgtgtcggtgtgg 37283812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtg 234  Q
    ||||||||||||||||| ||| | ||||||| |||    |||||||||||||||| |||||||||||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  235 tcggtgtggtgt 246  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataat 199  Q
    |||||||||||| |||||||| ||||||||| | ||| ||||||||| |||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 20539783 - 20539708
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| |||||||| | ||||||| |||||  ||||||||| |||||| ||||||||||||| ||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatc 20539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 4332891 - 4332981
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 241  Q
    |||||| ||||||||||||| | |||| ||| |||||||| | |||||||||| ||||||| | ||| |||| | |||||||||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatcac-ataattcaatgtaattatgtgtcggtgt 4332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 1327976 - 1328033
Alignment:
Q  183 ccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 241  Q
    ||||||||||||||||||||||||||||  || | |||| |||||||||||||||||||    
T  1327976 ccgacaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 21616737 - 21616787
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||  || ||||||||||||||||||||||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatc 21616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 19536507 - 19536434
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaa 208  Q
    |||||||||||  |||||||| ||||||||| |||||  | ||||||||||||||  |||||||||||| ||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 23717976 - 23718048
Alignment:
Q  134 actatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaa 207  Q
    ||||||||||||| |||| ||| | ||||| | |||||  |||||||| |||||||||||||||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 24105648 - 24105720
Alignment:
Q  134 actatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaa 207  Q
    ||||||||||||| |||| ||| | ||||| | |||||  |||||||| |||||||||||||||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 19573970 - 19574078
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtg 276  Q
    ||||||||||||||| ||||||||| |||||||  | ||| |||| | |||||||     ||||  ||||||||||||||||   |||||||||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataac-ataattcagtgtaattata----ggtggcgtgtcggtgtcggacacacctaattcgaggagtg 19574064  T
Q  277 tccgtgcttcatag 290  Q
    ||| ||||||||||    
T  19574065 tccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 44860320 - 44860394
Alignment:
Q  185 gacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    |||||||||||||||||||||||||||| ||| |||| | ||||  ||||||||||||| |||| ||||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgc-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggaca 44860394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 37411313 - 37411278
Alignment:
Q  175 ctgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||||||||||||||||||||||||||    
T  37411313 ctgacatgccgacaccgctaataatttgagaaaatc 37411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 38117261 - 38117193
Alignment:
Q  136 tatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||| ||||||||| |||      |||||||||||||| ||||||||||||| ||||||    
T  38117261 tatgaagcacggatacggacaccggacacgacac------tgacacgccgacacagctaataatttgaaaaaatc 38117193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 18420505 - 18420417
Alignment:
Q  173 tactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 260  Q
    |||||||||||| |||| |||||||||||||||||||| | ||| |||| |  ||||||  |||||||||| |||||  |||||||||||    
T  18420505 tactgacacgccaacactgctaataatttgagaaaatcac-ataattcaatgcaattataagtgtcggtgttgtgtccatgtcggacatg 18420417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  243 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 36409711 - 36409614
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    |||||| ||||| |||| ||| |||||||||||| ||||||||| |||||| | ||| || | | |||||||||||||||||  ||| |||||| ||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcac-ataatttagtgtaattatgtgtcggtgtcatgttggtgtctgaca 36409614  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 18276518 - 18276570
Alignment:
Q  182 gccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 235  Q
    ||||||||||||||||||||||||||||| || || |||| | |||||||||||    
T  18276518 gccgacaccgctaataatttgagaaaatcact-taattcagtgtaattatgtgt 18276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  136 tatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataattt 201  Q
    |||||||| || |||||||| ||| ||||| ||| |  |||||||||||||||| |||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 896200 - 896236
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  896200 actgacacgccgacactgctaatagtttgagaaaatc 896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 31018579 - 31018615
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  31018579 actgacacgccaacaccgctaataatttcagaaaatc 31018615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 31284041 - 31284073
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| ||||||||||||||||||||    
T  31284041 acacgccgacactgctaataatttgagaaaatc 31284073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 42832343 - 42832311
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||| |||||||||||||||||||||||||||    
T  42832343 gacacaccgacaccgctaataatttgagaaaat 42832311  T

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Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  134 actatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||| |||||||| ||||| | | |||||  ||||||||||||||||  |||||||||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 20122 - 20279
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atg 232  Q
    |||||||||||  |||||||| ||||||||| |||||  | |||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaag 20220  T
Q  233 tgtcggtgtggtgtcggtgtcggacatggctaattcgaggagt---gtccgtgcttcatag 290  Q
    |||| |||| |||||||||  ||||| | ||||| ||||||||   |||||||||||||||    
T  20221 tgtcagtgtcgtgtcggtg--ggacacgcctaatccgaggagtacagtccgtgcttcatag 20279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  134 actatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||| |||||||| ||||| | | |||||  ||||||||||||||||  |||||||||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  158 cggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  151 cggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||| ||||||||| |||||  |||||||||||||||||||||||||||||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  237 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 2896191 - 2896155
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  2896191 actgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 289
Target Start/End: Complemental strand, 10572690 - 10572535
Alignment:
Q  143 cacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtg 240  Q
    |||| |||||||| ||||||||| || |   ||||||||||||||||| ||||||||||||||||||| | ||| |||  | |||||  |||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcac-ataattcggtgtaattaaatgtgtcggtg 10572592  T
Q  241 tggtgtcggtgtc--------ggacatggctaattcgaggagtgtccgtgcttcata 289  Q
    | |||| ||||||        ||||| | ||||||| ||||||||||||||||||||    
T  10572591 ttgtgttggtgtcaggcacgtggacacgcctaattcaaggagtgtccgtgcttcata 10572535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 5376609 - 5376535
Alignment:
Q  134 actatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||| ||||| |||| || |||||||||| |||||  ||| |||||||||||||||||||||||| |||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaat 5376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 5927449 - 5927374
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||| ||||||| |||||||| ||||||||| |||||  ||||||||||  |||| ||||||||||||| ||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatc 5927374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 292
Target Start/End: Original strand, 44482234 - 44482343
Alignment:
Q  189 ccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg-----gctaattcgaggagtgtccgt 281  Q
    ||||| |||||||||||||||| | ||| |||| | |||||||  |||||||||| |||||||||||||||| |     |||||| ||||||||||||||    
T  44482234 ccgcttataatttgagaaaatcac-ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacagctaatccgaggagtgtccgt 44482332  T
Q  282 gcttcatagtt 292  Q
    ||| |||||||    
T  44482333 gctccatagtt 44482343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 12443538 - 12443494
Alignment:
Q  166 gcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaaaatc 12443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 19562691 - 19562655
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19562691 actgacacgccgacactgctaataatttgagaaaatc 19562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 609528 - 609493
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||| ||||||||||||||||||    
T  609528 actgacacgccgacaccactaataatttgagaaaat 609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 1486796 - 1486703
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 249  Q
    ||||| ||| ||||| ||||||||||| ||||| ||||||||||||| |||||| | ||| |||| | |||||||  |||||||||| |||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcac-ataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 31014993 - 31015068
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||| | || ||| |||| |||| |||||  |||||| |||| |||| ||||||||||||||||||||    
T  31014993 ctatgaagcacggacacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatc 31015068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 38503313 - 38503386
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggt 250  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| | ||||  |||||||||||||  |||||||    
T  38503313 acacaccgacaccgctaataatttgagaaaatc-atatatttcagtgtaattatatgtgtcggtgtcctgtcggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  148 atacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    |||||||| ||||||||| |||||  |||||||||||||||| | |||||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 1262876 - 1262933
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 235  Q
    ||||||||||||| |||||||||||||||||||| | ||| |||| |||||||| ||||    
T  1262876 gacacgccgacacagctaataatttgagaaaatcac-ataattcaatataattaagtgt 1262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 3490460 - 3490426
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaa 208  Q
    |||||||||||||||| ||||||||||||||||||    
T  3490460 actgacacgccgacactgctaataatttgagaaaa 3490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 9709795 - 9709845
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||  ||||||| ||| |||||||||||||||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaaaatc 9709845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 10475045 - 10475011
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||||| |||||||||||    
T  10475045 tgacacgccgacaccgctaataacttgagaaaatc 10475011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 34298411 - 34298461
Alignment:
Q  160 gacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| |||||  |||||||| |||||||| |||||||||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatc 34298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 39130876 - 39130802
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||| |||||||| ||||||||| || || || |||||||| |||||   ||||||||| |||||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaat 39130802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 40285724 - 40285686
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatcgc 212  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40285724 actgacacaccaacaccgctaataatttgagaaaatcgc 40285686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 20157437 - 20157384
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| |||||  ||||||||  |||||||||||||||| ||||||||||    
T  20157437 ccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatc 20157384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 21530681 - 21530714
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||| ||||||||||||||||||    
T  21530681 gacacgccgacaccgttaataatttgagaaaatc 21530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 25361881 - 25361960
Alignment:
Q  180 acgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    ||||||||||| || |||||||||||||||| | ||| |||| | ||||  |||||||| |||| ||||||||||||||||    
T  25361881 acgccgacaccactgataatttgagaaaatcac-ataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggaca 25361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 41877534 - 41877505
Alignment:
Q  180 acgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||||||||||||||||    
T  41877534 acgccgacaccgctaataatttgagaaaat 41877505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 6415071 - 6415035
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  6415071 actgacacgccgacatcgctaattatttgagaaaatc 6415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9828036 - 9828118
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataa--ttatgtgtcggtgtggtgtcggtgtcggaca 258  Q
    |||||||||||||| |||||||||||| |||||| | ||| |||| | |||  |||||||||||||| ||||| ||||| ||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcac-ataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagaca 9828118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 25452215 - 25452152
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 241  Q
    |||| ||| |||| |||||||||||||||||||| | ||| |||| | |||||||||||||||||    
T  25452215 gacatgccaacactgctaataatttgagaaaatctc-ataattcagtgtaattatgtgtcggtgt 25452152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 46348453 - 46348417
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  46348453 actgacacgccgacacagctaataatttgaaaaaatc 46348417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 8039903 - 8039818
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgtcggacatg 260  Q
    ||||||||| ||||||||||||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||||||||||    
T  8039903 tgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatg 8039818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||| |||||| | |||||| | ||||||| |||||  | |||||||||||||||||||||||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  148 atacggac-tccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 246  Q
    |||||||| |||||||||| ||| |  |||||||||||| ||||||||| |||||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| ||||||||| |||||  |||||||||||||||| | |||||||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataattt 201  Q
    |||||||||||| |||||||| ||||| ||| |||||  | ||||| ||||||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 5407325 - 5407261
Alignment:
Q  166 gcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 231  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||| | ||| |||||| |||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaaaatcac-ataattcattgtaattat 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| |||||  |||||||||||||||  ||||||||||||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 4991061 - 4991002
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| ||| ||||| |||||  |||||||| ||||||||||||||| |||||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaat 4991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 9800029 - 9800064
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9800029 actgacacgccgacacctctaataatttgagaaaat 9800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  144 acgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttga 203  Q
    ||||| |||||| ||||||||| |||||  ||||||||||||||||  ||||||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 25064859 - 25064981
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtg 234  Q
    ||||||| ||||  ||| ||| ||||||||| ||| |  | ||||||||||||||||||||| |||||| |||||| | ||| || | | ||||||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcac-ataatttagtgtaattatgtg 25064957  T
Q  235 tcggtgtggtgtcggtgtcggaca 258  Q
    | ||| | |||| |||||||||||    
T  25064958 ttggtatcgtgttggtgtcggaca 25064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 55401025 - 55401100
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||  |||||||| ||||| ||| |||||  ||||| ||||||||||  |||||||||||| ||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatc 55401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatagtt 292  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 8587129 - 8587055
Alignment:
Q  136 tatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||  |||||||| ||||||| | |||||  ||||||||||||||||  ||| |||||||| ||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatc 8587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  136 tatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||| |||||||| ||||||||  ||||   | |||||| |||||| |||||||||||| ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 34307846 - 34307794
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 231  Q
    |||||| |||||||||||||||||||||||||| | |||||||| | |||||||    
T  34307846 acacgctgacaccgctaataatttgagaaaatcac-atatttcagtgtaattat 34307794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 2620123 - 2620087
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  2620123 actgacacgccgacaccactaatcatttgagaaaatc 2620087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 4987361 - 4987325
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  4987361 actgacacgccgacacagctaataatttgaaaaaatc 4987325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 6525750 - 6525714
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||| | |||||||||||||||||||||||||||    
T  6525750 actgacatgtcgacaccgctaataatttgagaaaatc 6525714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 14618732 - 14618804
Alignment:
Q  136 tatgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaa 208  Q
    |||||||||||  ||||||| || |||||| |||||  ||||| |||| |||||| |||||||||| ||||||    
T  14618732 tatgaagcacgggtacggacaccagacacgacacgggcactgagacgctgacacccctaataatttaagaaaa 14618804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 15796388 - 15796328
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| |||||  | |||||||||||||| | ||||||||||| ||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 15796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 21479107 - 21479143
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  21479107 actgacacgccgacacagctaataatttgaaaaaatc 21479143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 21720753 - 21720785
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaa 206  Q
    |||||||||||||||||| ||||||||||||||    
T  21720753 actgacacgccgacaccgataataatttgagaa 21720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 25074781 - 25074813
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||| |||||||||||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaat 25074813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 26290360 - 26290396
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||  ||||||||||||||||||    
T  26290360 actgacacgccgacaccattaataatttgagaaaatc 26290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 26492291 - 26492239
Alignment:
Q  158 cggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||| |||||  |||||||||||||||  ||||||||||||| ||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatc 26492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 40052321 - 40052357
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  40052321 actgacacgccgacacagctaataatttgaaaaaatc 40052357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 21002 - 21149
Alignment:
Q  144 acgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgt 241  Q
    ||||| |||||| || |||||| |||||  ||||||| || ||||| | |||||||||||||||||| | |||  ||  |||||||||  |||||||| |    
T  21002 acgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcac-ataagtcggtataattatatgtgtcggtat 21100  T
Q  242 ggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
     ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21101 cgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  229 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  229 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| |||||  |||||||||||||||| ||||||||||||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 53170 - 53256
Alignment:
Q  175 ctgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggacatg 260  Q
    |||||||||||| ||||| ||||||||||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatg 53256  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||| ||||||||| |||||  |||||||||||||||| | |||||||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 92796 - 92831
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||||||||||||||||||||||    
T  92796 actgacacgccgacaccgctaataatttgagaaaat 92831  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 241559 - 241668
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtc 247  Q
    |||||| ||||||||| |||||  |||||||||||||||| ||||||||||||  |||||| | ||| || | | |||||||  |||||||||| ||||     
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcac-ataatttagtgtaattatgagtgtcggtgtcgtgtt 241657  T
Q  248 ggtgtcggaca 258  Q
    |||||||||||    
T  241658 ggtgtcggaca 241668  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 35723455 - 35723420
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaat 35723420  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 17345485 - 17345451
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaa 208  Q
    |||||||||||||||||||||||||||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaaaa 17345451  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||||||||| |||||  | |||||||||||||| ||||||||||||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 30982935 - 30982863
Alignment:
Q  187 caccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgtcggaca 258  Q
    |||||||||| ||||||||||||| | |||||||| | |||||||  |||||||||| ||||||||||| ||||    
T  30982935 caccgctaatgatttgagaaaatcac-atatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagaca 30982863  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 40613441 - 40613475
Alignment:
Q  176 tgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||||||||| ||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatc 40613475  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 847918 - 847975
Alignment:
Q  152 ggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||| ||||||||| ||| |  |||||||||||||  |||||||||||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaat 847975  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 36635296 - 36635349
Alignment:
Q  157 ccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| | |||  ||||||||||| ||||| |||||||||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatc 36635349  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 1747205 - 1747237
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||||||||| |||||||||||    
T  1747205 acacgccgacaccgctaataaattgagaaaatc 1747237  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 5775469 - 5775392
Alignment:
Q  135 ctatgaagcacgaatacggactccggacacggcacgg---ctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| |||| | ||||||| |||||   ||||||||||  |||||||  ||||||||||||||||||    
T  5775469 ctatgaagcacgaatatggacacaggacacgacacggacactactgacac-acgacaccattaataatttgagaaaatc 5775392  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 7012058 - 7012090
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaat 209  Q
    ||||||||||||||| |||||||||||||||||    
T  7012058 gacacgccgacaccgataataatttgagaaaat 7012090  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  246 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  254 ggacatggctaattcgaggagtgtccgtgcttcatag 290  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 178925 - 178853
Alignment:
Q  138 tgaagcacgaatacggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||| |||  ||| ||||||||| |||||  ||||||||||||||||  |||||||||||| ||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 178853  T

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Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 192319 - 192284
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaat 209  Q
    |||||||||||||||||| |||||||||||||||||    
T  192319 actgacacgccgacaccgttaataatttgagaaaat 192284  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 1636 - 1669
Alignment:
Q  177 gacacgccgacaccgctaataatttgagaaaatc 210  Q
    ||||||||||||||| ||||||||||||||||||    
T  1636 gacacgccgacaccgttaataatttgagaaaatc 1669  T

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Target: scaffold0279 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 17936 - 17903
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcg 211  Q
    ||||||| ||||||||||||||||||||||||||    
T  17936 acacgcctacaccgctaataatttgagaaaatcg 17903  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 556 - 496
Alignment:
Q  150 acggactccggacacggcacggctactgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||| ||| ||||| |||||  ||||| |||||||||| ||||||||||||| ||||||    
T  556 acggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatc 496  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  262 ctaattcgaggagtgtccgtgcttcatag 290  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 28843 - 28913
Alignment:
Q  178 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 247  Q
    |||||||||||||| ||||||||| |||||||||| ||| |||| | ||||  ||||||||||||| |||||    
T  28843 acacgccgacaccgttaataatttaagaaaatcgc-ataattcaatgtaattatatgtgtcggtgttgtgtc 28913  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 51800 - 51836
Alignment:
Q  174 actgacacgccgacaccgctaataatttgagaaaatc 210  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  51800 actgacacgccgacacagctaataatttgaaaaaatc 51836  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  244 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 292  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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