View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17085_high_2 (Length: 323)
Name: NF17085_high_2
Description: NF17085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17085_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38816171 - 38815928
Alignment:
| Q |
1 |
ataattgtgcatgtgattctgtgaagggaattggataagatagaaatgtaaacctagttatagaagtgtaatttttaaaattaattttactgttgttggg |
100 |
Q |
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| T |
38816171 |
ataattgtgcatgtgattctgtgaagggaattggataagatagaaatgtaaacctagttatagaagtgtaatttttaaaattaattttactgttgttggg |
38816072 |
T |
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| Q |
101 |
aaattctactttaattgtggtctgcctctaaccaccttaattgcggcatttaggttttccctcattgtcgcttccaacaccttcattgtgttggacttga |
200 |
Q |
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| T |
38816071 |
aaattctactttaattgtggactgcctctaaccaccttaattgcggcatttgggttttccctcattgtcgcttccaacaccttcattgtgttggacttga |
38815972 |
T |
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| Q |
201 |
gaggtcgggtttagtcccgcatgaccaagagacatggcctaagt |
244 |
Q |
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| T |
38815971 |
gaggtcgggtttagtcccgcatgaccaagagacatggcctaagt |
38815928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 38815781 - 38815698
Alignment:
| Q |
240 |
taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactcta |
323 |
Q |
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| T |
38815781 |
taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactcta |
38815698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 38821591 - 38821542
Alignment:
| Q |
41 |
tagaaatgtaaacctagttatagaagtgtaatttttaaaattaattttac |
90 |
Q |
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| T |
38821591 |
tagaaatatagacctagttatagaagtgccttttttaaaattaattttac |
38821542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 5424925 - 5424847
Alignment:
| Q |
139 |
aattgcggcatttaggttttccctcattgtcgcttccaacaccttcattgtgttggacttgagaggtcgggtttagtccc |
218 |
Q |
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| T |
5424925 |
aattgcggccttt-ggttttccttcattgcagcctccaacaccttcattgtgttgcctttgagagggtgggtttagtccc |
5424847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 2115530 - 2115567
Alignment:
| Q |
281 |
aagccgattttgtagggttgaattagactcaacccaaa |
318 |
Q |
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| T |
2115530 |
aagccggttttgtagggttcaattagactcaacccaaa |
2115567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 22866994 - 22867069
Alignment:
| Q |
114 |
attgtggtctgcctctaaccaccttaattgcggcatttaggttttccctcattgtcgcttccaacaccttcattgtg |
190 |
Q |
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| T |
22866994 |
attgtggtctgcccctagtcgccttaattgcggccttta-gtttgccttcattgcagcttccaacaccttcgttgtg |
22867069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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