View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17085_low_1 (Length: 642)
Name: NF17085_low_1
Description: NF17085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17085_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 32301656 - 32302155
Alignment:
| Q |
17 |
aatcgcaattttgatgttattgtggagatcactaaaatcgttatattgtagttgcaattgcagttgtggatcgcaagttagaaccatgataaaaaagata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||| |
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| T |
32301656 |
aatcgcaattttgatgttattgtggagatcactaaaatcgttatattgtagttg------------tggatcgcaattaagaaccatgataaaaaaaata |
32301743 |
T |
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| Q |
117 |
agaattatgttactaacaaatttttagacctaataggttttagaagccactttggaggagagatacattcagccaacaaaaataatgttgatccataaac |
216 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
32301744 |
agaattatgttactaacaaacttttagacctaataagttttagaagccactttggag---agatacattcagcca--------------------taaac |
32301820 |
T |
|
| Q |
217 |
ttggatcacagtttctgatttcatctccatgctgaggtggaatacacttgtagtagactttctgtctggtgtgcaaccaaaacctcttcagcacatgaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32301821 |
ttggatcacagtttctgatttcatctccatgctgaggtggaatacacttgtagtagactttctgtctggtgtgcaaccaaaacctcttcagcacatgaat |
32301920 |
T |
|
| Q |
317 |
cttttaatgggtacttgttccttagattatccaccaattaaatgtcaccgacttctaatattgaatttaaataatcaaggtgtatctctgctttaactaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32301921 |
cttttaatgggtacttgttccttagattatccaccaattaaatgtcaccgacttctaatattgaatttaaataatcaaggtgtatctctgctttaactaa |
32302020 |
T |
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| Q |
417 |
caattagtaggaattaacaatattagaaattcctgcttatttagtctcatggcggatccaggactaagtttttagtgtggctaaaatattagtgtcaaaa |
516 |
Q |
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| T |
32302021 |
caattagtaggaattaataatattagaaattcctgcttatttagtctcatggcggatctaggactaagtttttagtgtggctaaaatattagtgtcaaaa |
32302120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 642
Target Start/End: Original strand, 32302214 - 32302247
Alignment:
| Q |
609 |
gaaccacaccaaaccatatattagaaccgttcat |
642 |
Q |
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| T |
32302214 |
gaaccataccaaaccatatattagaaccgttcat |
32302247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 3829486 - 3829530
Alignment:
| Q |
469 |
cggatccaggactaagtttttagtgtggctaaaatattagtgtca |
513 |
Q |
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| T |
3829486 |
cggatccaggactaatgttttagtgtggctaaaataatagtgtca |
3829530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 541
Target Start/End: Original strand, 10122883 - 10122940
Alignment:
| Q |
485 |
tttttagtgtggctaaaatattagtgtcaaaatatttgtccaa-aaaattgaatatta |
541 |
Q |
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| T |
10122883 |
tttttagtgtggctaaaataatagtgtcaaacaatttatccaataaaatttaatatta |
10122940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 17152955 - 17152907
Alignment:
| Q |
467 |
ggcggatccaggactaagtttttagtgtggctaaaatattagtgtcaaa |
515 |
Q |
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| T |
17152955 |
ggcggatccaggattagatttttagtgtggctaaaataatagtgccaaa |
17152907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 34287665 - 34287617
Alignment:
| Q |
467 |
ggcggatccaggactaagtttttagtgtggctaaaatattagtgtcaaa |
515 |
Q |
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| T |
34287665 |
ggcggatccaagagtaattttttggtgtggctaaaataatagtgtcaaa |
34287617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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