View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17085_low_3 (Length: 295)
Name: NF17085_low_3
Description: NF17085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17085_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31189945 - 31189668
Alignment:
| Q |
1 |
cttggaagacgtatatttgacatatatattcaggtgcatgatctcatcatcttatgtttttcagcaacatgtttagtattgaacaagtttcctttgaccg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31189945 |
cttggaagacgtatatttgacatatatattcaggtgcatgatctcatcatcttatgtttttcagcaacatgtttagtattgaacaagtttcctttgaccg |
31189846 |
T |
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| Q |
101 |
ttataaaccattttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31189845 |
ttataaaccattttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttcactgcta |
31189746 |
T |
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| Q |
201 |
atgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
278 |
Q |
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| T |
31189745 |
atgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
31189668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 31178671 - 31178395
Alignment:
| Q |
1 |
cttggaagacgtatatttgacatatatattcaggtgcatgatctcatcatcttatgtttttcagcaacatgtttagtattgaacaagtttcctttgaccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31178671 |
cttggaagacgtatatttgacatatatattcaggtgcatgatctcatcatcttatgtttttcagcaacatgtttagtattgaacaagtttcctttgacca |
31178572 |
T |
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| Q |
101 |
ttataaaccattttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgcta |
200 |
Q |
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| T |
31178571 |
ttataaaccattttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaatttcactgcta |
31178472 |
T |
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| Q |
201 |
atgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagta |
277 |
Q |
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| T |
31178471 |
atgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagta |
31178395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 31197823 - 31197658
Alignment:
| Q |
113 |
ttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgctaatgtgactagta |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
31197823 |
ttgcagagaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaagcaatcataaagaagttcactgctaatgtgactagta |
31197724 |
T |
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| Q |
213 |
atacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
278 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31197723 |
atacattggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
31197658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 31216435 - 31216270
Alignment:
| Q |
113 |
ttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgctaatgtgactagta |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
31216435 |
ttgcagagaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaagcaatcataaagaagttcactgctaatgtgactagta |
31216336 |
T |
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| Q |
213 |
atacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
278 |
Q |
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| T |
31216335 |
atacattggagattcgccttcattgggcggggaaagggacaaccggtatcccatttgattcagtac |
31216270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 31231145 - 31230997
Alignment:
| Q |
121 |
aaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgctaatgtgactagtaatacgttg |
220 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |
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| T |
31231145 |
aaggttggtgctgaaggattttaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttcactgctagtgtgactagtaatacgctg |
31231046 |
T |
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| Q |
221 |
gagattcgccttcattgggcggggaaagggacaaccggtatcccatttg |
269 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
31231045 |
gagattcgccttcattgggctgggaaagggacaactgctatcccatttg |
31230997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 31243739 - 31243591
Alignment:
| Q |
121 |
aaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcaatcataaagaagttccctgctaatgtgactagtaatacgttg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||| ||||||||||||||||||| |
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| T |
31243739 |
aaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaaggcagtcgtaaagaaattcactgctattgtgactagtaatacgttg |
31243640 |
T |
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| Q |
221 |
gagattcgccttcattgggcggggaaagggacaaccggtatcccatttg |
269 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||||||||| |
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| T |
31243639 |
gagattcgccttcattgggctgggaaagggacaactgctatcccatttg |
31243591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 31290305 - 31290264
Alignment:
| Q |
134 |
aaggatttcaatattgcaaaagaagccggtggagttggtaag |
175 |
Q |
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|||||||||||||||||||||||||| || |||||||||||| |
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| T |
31290305 |
aaggatttcaatattgcaaaagaagcgggaggagttggtaag |
31290264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 31421947 - 31422012
Alignment:
| Q |
110 |
attttgcagggaaggttggtgctgaaggatttcaatattgcaaaagaagccggtggagttggtaag |
175 |
Q |
| |
|
||||||||||||| | ||||| |||||||||||||||||||||||||| || ||||| |||||| |
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| T |
31421947 |
attttgcagggaaagccggtgcaaaaggatttcaatattgcaaaagaagcgggaggagtcggtaag |
31422012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 21000683 - 21000757
Alignment:
| Q |
195 |
ctgctaatgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttg |
269 |
Q |
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|||||| ||||||||||||| | |||||||||||| | ||||||| |||||||| ||||| ||||||||||| |
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| T |
21000683 |
ctgctagtgtgactagtaatgcattggagattcgcttatattgggctgggaaaggaacaactactatcccatttg |
21000757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 21010684 - 21010610
Alignment:
| Q |
195 |
ctgctaatgtgactagtaatacgttggagattcgccttcattgggcggggaaagggacaaccggtatcccatttg |
269 |
Q |
| |
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|||||| ||||||||||||| | |||||||||||| | ||||||| |||||||| ||||| ||||||||||| |
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| T |
21010684 |
ctgctagtgtgactagtaatgcattggagattcgcttatattgggctgggaaaggaacaactactatcccatttg |
21010610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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