View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17085_low_4 (Length: 215)
Name: NF17085_low_4
Description: NF17085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17085_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 37897450 - 37897253
Alignment:
| Q |
1 |
aagagtccctgaaacaacagcatgtcaaagagcgtcgtcctacactaatgtcgtgccccagttccgtcatctctccaccaatgt--tgtcttttggtaat |
98 |
Q |
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| T |
37897450 |
aagagtccctgaaacaacagcatgtcaaagagcgtcgtcctacactaatgtcgtg-cccagttccgtcatctctccaccaatgttgtgtcttttggtagt |
37897352 |
T |
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| Q |
99 |
atgttattagtcgctcaatgtccaatttaatgtctgagttnnnnnnnnnnntcaatttaatggaatatcatcattttcaactcacacataagggtgtca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37897351 |
atgttattagtcgctcaatgtccaatttaatgtctgagttaaaaaaaaaaatcaatttaatggaatatcatcattttcaactcacacataagggtgtca |
37897253 |
T |
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