View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17086_high_3 (Length: 250)
Name: NF17086_high_3
Description: NF17086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17086_high_3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 45253943 - 45254180
Alignment:
| Q |
13 |
aatatcaacttatgagaatttgcaaggacttgtggatgttattctagtcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45253943 |
aatatcaacttatgagaatttgcaaggacttgtggatgttattctagtcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatata |
45254042 |
T |
|
| Q |
113 |
attgattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtat |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45254043 |
attcattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtat |
45254142 |
T |
|
| Q |
213 |
ttggcacattgcgtttgtatattgttgcaaatgagaat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45254143 |
ttggcacattgcgtttgtatattgttgcaaatgagaat |
45254180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 44261696 - 44261480
Alignment:
| Q |
13 |
aatatcaacttatgagaatttgcaaggacttgtggatgttattctagtcactttgaatacactgatgaatgaaatggtttttcctactgaaggaaatata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44261696 |
aatatcaacttatgagaatttgcaaggacttgtggatattattctagtcactttgaatacactgatgaatgaaatggtttttcctatcgaaggaaatata |
44261597 |
T |
|
| Q |
113 |
attgattgcattcgttatggtgatcccaaatatgagacacttgatattaggaaaggtttgcattgtgcaattgagcaacagaaggtggttaaacgagtat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
44261596 |
attgattgcattcgttatggtgatcccaaatatgagacagttgatattaggaagggtttacattgtgcaattgagcaacagaaggtggttaaatgagtct |
44261497 |
T |
|
| Q |
213 |
ttggcacattgcgtttg |
229 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
44261496 |
ttggcacattacgtttg |
44261480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University