View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17086_low_1 (Length: 328)
Name: NF17086_low_1
Description: NF17086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17086_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 37915929 - 37915637
Alignment:
| Q |
20 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
119 |
Q |
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| T |
37915929 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
37915830 |
T |
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| Q |
120 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915829 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
37915730 |
T |
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| Q |
220 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataaga |
312 |
Q |
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| T |
37915729 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataaga |
37915637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 37907776 - 37907499
Alignment:
| Q |
20 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
119 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37907776 |
tctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacatcaa |
37907677 |
T |
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| Q |
120 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
219 |
Q |
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| T |
37907676 |
gtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcactctt |
37907577 |
T |
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| Q |
220 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaac |
300 |
Q |
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||||||||||||||| || |||||||||||| | ||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
37907576 |
aaaatctcttatcttcttttaaatagcatttgctg---caacaataccatctttttcaactaactcacccctttttacaac |
37907499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 37960266 - 37960560
Alignment:
| Q |
20 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||||| || || |||||||||||||| |||||||||||| | | |
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| T |
37960266 |
tctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagcca |
37960365 |
T |
|
| Q |
120 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
219 |
Q |
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||| || || |||| ||||| | ||||| ||||| |||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| |||||| |
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| T |
37960366 |
atttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctt |
37960465 |
T |
|
| Q |
220 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagatg |
314 |
Q |
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|||| |||||||||| ||| ||| || ||| ||| || ||| |||| |||||||| ||||||| | || |||||| | || |||||||||| |
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| T |
37960466 |
taaatgtcttatcttcttttcgataccaattgaagccgaaacaatcccattttttccaattaactcatctctctttacagccacggtataagatg |
37960560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 37954458 - 37954552
Alignment:
| Q |
21 |
ctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaaca |
115 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||| |||||||| || || ||||| |||||||| |||||||||||| |
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| T |
37954458 |
ctctacaatcagaaagagaaatcgaaccggatgaatcaagatgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaaca |
37954552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 3783880 - 3783791
Alignment:
| Q |
211 |
atcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaac |
300 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||||| ||| ||| ||| |||| | |||||||||||||| |||| |||||||| |
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| T |
3783880 |
atcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgttccaactaactcagccctctttacaac |
3783791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 3784063 - 3783960
Alignment:
| Q |
31 |
agaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgac |
130 |
Q |
| |
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||||| |||||||||| |||||||||| ||| ||| |||| ||||| || || || |||||||| || ||||||||||||||||||| |||||| || |
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| T |
3784063 |
agaaatagaaatcgaagacgacgaatcaagatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcataaacatcaaatttaggtgag |
3783964 |
T |
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| Q |
131 |
ccag |
134 |
Q |
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|||| |
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| T |
3783963 |
ccag |
3783960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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